View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_low_6 (Length: 358)
Name: NF4229_low_6
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 5230920 - 5230583
Alignment:
| Q |
1 |
ccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttggtctatgagatatagcaccaccgaaatcagtgtacctatagaataggtaag |
100 |
Q |
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| T |
5230920 |
ccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttggtctatgagatatagcaccaccgaaatcagtgtacctacagaataggtaac |
5230821 |
T |
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| Q |
101 |
ataaaaattaaacatatgatcccaaatgaaatatttatagctttaaattaatggtagcatttgaatgagcatgaattaccagccagaccaattctcagtc |
200 |
Q |
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| T |
5230820 |
ataaaaattaaacatatgatcccaaatgaaatatttatagctttaaattaatggtagcatttgaatgagcatgacttaccagccagaccaattctcagtc |
5230721 |
T |
|
| Q |
201 |
cacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctacaacatagttcagtaaatatatatcaaac |
300 |
Q |
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| T |
5230720 |
cacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctacaacatagttcagtaaatatatatcaaac |
5230621 |
T |
|
| Q |
301 |
agagaaagatgaaagtaagaataaattaatattagttt |
338 |
Q |
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| T |
5230620 |
agagaaagatgaaagtaagaataaattaatattagttt |
5230583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 17126333 - 17126237
Alignment:
| Q |
177 |
taccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctaca |
273 |
Q |
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| T |
17126333 |
taccagccagtccaattttctgtccacatttttggtttgtagttcttgttgggagagaagttttcacagtaatatccattacaggtatcaatctaca |
17126237 |
T |
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