View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_high_10 (Length: 370)
Name: NF4230_high_10
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 39 - 354
Target Start/End: Original strand, 41331721 - 41332037
Alignment:
| Q |
39 |
cacaagttgtgcatgtataagtggaagattaggcaccaaattaatgcactatacaatatagtatgcccataccactatctttattctctactagagctta |
138 |
Q |
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| T |
41331721 |
cacaagttgtgcatgtataagtggaagattaggcaccaaattaatgcactatacaatatagtatgcccataccactatctttattctctactagagctta |
41331820 |
T |
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| Q |
139 |
aaatagaacagatagtgaaccactataaacttcaaaggtacatgcttgattgatatctatccatgaatgtaagtgggtgactagggaagagaaccacaca |
238 |
Q |
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| T |
41331821 |
aaatagaacagatagtgaaccactataaacttcaaaggtacatgcttgattgatatctatccatgaatgtaagtgggtgactagggaagagaaccacaca |
41331920 |
T |
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| Q |
239 |
ttaaggag-aaaaaatatggctagaaaatggaaggcaaaagaaggtggaaccgaaaagtgcaaaatggtcttgcatagatacattttagactttgttcag |
337 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41331921 |
ttaaggagaaaaaaatatggctagaaaatggaaggcaaaagaaggtggaaccgaaaagtgcaaaatggtcttgcatagatacattttagactttgttcag |
41332020 |
T |
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| Q |
338 |
ttcatagcatattttca |
354 |
Q |
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||||||||||||||||| |
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| T |
41332021 |
ttcatagcatattttca |
41332037 |
T |
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