View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_high_11 (Length: 368)
Name: NF4230_high_11
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 43761195 - 43761336
Alignment:
| Q |
11 |
aatgagatgaacaaaaattgcatgaaaaaaggagggcattgtgcctttatcttggtttgaattgcagatattaactcaatcataacccacataacaccaa |
110 |
Q |
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| T |
43761195 |
aatgaaatgaacaaaaattgcatgaaaaaaggagggcattgtgcctttatcttggtttgaattgcagatattaactcaatcataacccacataacaccaa |
43761294 |
T |
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| Q |
111 |
aacttttaactatggagttggagtgtgatcgcatttgtatct |
152 |
Q |
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| T |
43761295 |
aacttttaactatggagttggagtgtgatggcatttgtatct |
43761336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 228 - 350
Target Start/End: Original strand, 43761412 - 43761534
Alignment:
| Q |
228 |
tttgtatcttgcagatcaagaaaccaaggagtgtaacatggaaaacaaaataaaactgaaaacagatcattctctcaaacaaattggatctcatagtttt |
327 |
Q |
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| T |
43761412 |
tttgtatcttgcagatcaagaaaccaaggagtgtaacatggaaaacaaaataaaactgaaaacagatcattttctcaaacaaattggatctcatagtttt |
43761511 |
T |
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| Q |
328 |
ctttcctcttagaaactaattgt |
350 |
Q |
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| T |
43761512 |
ctttcctcttagaaactaattgt |
43761534 |
T |
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