View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_high_19 (Length: 248)
Name: NF4230_high_19
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 52430170 - 52430401
Alignment:
| Q |
1 |
ttgaaatttaaatttaaaagaaaatataagcacaagaatggtatctgaattccaaaacgatatcaaacataactgaacaaagtgagagagcaactctaaa |
100 |
Q |
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| T |
52430170 |
ttgaaatttgaatttaaaagataatataagcacaagaatggtatctgaattccaaaacgatatcaaacataactgaacaaagtgacagagcaactctaaa |
52430269 |
T |
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| Q |
101 |
tgaccaccagtgagcaacatacctgatgagaaaaaacccgagccatgataatgtcgttataacgagacaaaactcgagcaacatcacgagtctcctctcg |
200 |
Q |
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| T |
52430270 |
tgaccaccagtgagcaacatacctgatgagaaaaaacccgagccatgataatgtcgttataacgagacaaaactcgagcaacatcacgagtctcctctcg |
52430369 |
T |
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| Q |
201 |
cttacccatttgaatgtcatcaggtcctaagt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52430370 |
cttacccatttgaatgtcatcaggtcctaagt |
52430401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 7144066 - 7144150
Alignment:
| Q |
115 |
caacatacctgatgagaaaaaacccgagccatgataatgtcgttataacgagacaaaactcgagcaacatcacgagtctcctctc |
199 |
Q |
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|||||||||| |||| |||||| |||||||| | |||||| || | |||||||| | ||||||||||||||||||||||||| |
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| T |
7144066 |
caacataccttgtgagtaaaaacacgagccataacaatgtcagtaaagcgagacaagatacgagcaacatcacgagtctcctctc |
7144150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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