View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_high_3 (Length: 651)
Name: NF4230_high_3
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 116 - 324
Target Start/End: Original strand, 6720708 - 6720916
Alignment:
| Q |
116 |
aaacttacccatatatgatccatgccaaatggtattttcaaattcaaggtcatcatcttcctcgagaccggttggtggttcaatcacactaagagcattc |
215 |
Q |
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| T |
6720708 |
aaactcacccatatctgatccatgccaaatggtattttcaaattcaaggtcatcatcttcctcgagaccggttggtggttcaatcacactaagagcattc |
6720807 |
T |
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| Q |
216 |
ctctgcagcttcacttcaataccattgggaagaacctgcacatttttcatgaaacaaagtaaaataaccatccatgcaacaattgtatatgaaactctta |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
6720808 |
ctctgcagcttcacttcaataccattggtaagaacctgcacatttttcatgaaacaaagtaatataaccatccatgcaacaattgtatgtgaaactctta |
6720907 |
T |
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| Q |
316 |
gacatcaca |
324 |
Q |
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|| |||||| |
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| T |
6720908 |
gaaatcaca |
6720916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 6721085 - 6721123
Alignment:
| Q |
498 |
ttactcttcaaaataggaaagattgaataaaattggcaa |
536 |
Q |
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| T |
6721085 |
ttactctttaaaataggaaagattgaataaaattggcaa |
6721123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 463
Target Start/End: Original strand, 6720994 - 6721054
Alignment:
| Q |
402 |
gagttatagtcaaagcatgtatgtagctaaaacaaacaatctgagattaaaacatcaacata |
463 |
Q |
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| T |
6720994 |
gagttacaatcaaagcatgcatgtagctaaaagcaacaatctgagatt-gaacatcaacata |
6721054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 9e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 534 - 643
Target Start/End: Complemental strand, 21839469 - 21839360
Alignment:
| Q |
534 |
caaaggatcagaagcatcaagcaattctgaaacaaatctacattgatgtatgatgccaaatttagttttcagttcctaactatatcagtgtgaaagtgag |
633 |
Q |
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| T |
21839469 |
caaagtatcagaagcatctagcaattctgaaacaaatcaacattgatgtatgatgccaaatttagttttcagttcctaactaaatcactgtgaaagtgag |
21839370 |
T |
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| Q |
634 |
agtgatgatg |
643 |
Q |
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|||| ||||| |
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| T |
21839369 |
agtggtgatg |
21839360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 15737322 - 15737389
Alignment:
| Q |
30 |
cactttactttgcaaactgatctatatctatggtagacatttgtttctttatttcagtccttaataac |
97 |
Q |
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| T |
15737322 |
cactttactttgcaaactgatctatatccatagtagacatttgtgtctttatttcagtccttaataac |
15737389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 15831462 - 15831529
Alignment:
| Q |
30 |
cactttactttgcaaactgatctatatctatggtagacatttgtttctttatttcagtccttaataac |
97 |
Q |
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||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||||||| ||||| |
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| T |
15831462 |
cactttactttacaaactgatctatatccatggtatatatttgtttctttatttcagtcctttataac |
15831529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 15815146 - 15815213
Alignment:
| Q |
30 |
cactttactttgcaaactgatctatatctatggtagacatttgtttctttatttcagtccttaataac |
97 |
Q |
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||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||| ||| ||||| |
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| T |
15815146 |
cactttactttacaaactgatctatatccatggtatatatttgtttctttatttcagttctttataac |
15815213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 52219828 - 52219930
Alignment:
| Q |
153 |
tcaaattcaaggtcatcatcttcctcgagaccggttggtggttcaatcacactaagagcattcctctgcagcttcacttcaataccattgggaagaacct |
252 |
Q |
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||||||||||||||||||||||| ||| || || |||| |||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||| |
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| T |
52219828 |
tcaaattcaaggtcatcatcttcttcgttgccagtgggtgcttcaatcacactaagagcattcctttgcagcttcacttcaattccattagtaagaacct |
52219927 |
T |
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| Q |
253 |
gca |
255 |
Q |
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| T |
52219928 |
gca |
52219930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 534 - 643
Target Start/End: Original strand, 39002666 - 39002775
Alignment:
| Q |
534 |
caaaggatcagaagcatcaagcaattctgaaacaaatctacattgatgtatgatgccaaatttagttttcagttcctaactatatcagtgtgaaagtgag |
633 |
Q |
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|||||||||| ||||||| || |||||| |||||||| |||||| || |||||||||| ||||||| |||||||||| ||| |||| |||||||||||| |
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| T |
39002666 |
caaaggatcaaaagcatctagtaattctaaaacaaattaacattgctgcatgatgccaactttagttatcagttcctagctaaatcactgtgaaagtgag |
39002765 |
T |
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| Q |
634 |
agtgatgatg |
643 |
Q |
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| T |
39002766 |
aatggtgatg |
39002775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 25286670 - 25286703
Alignment:
| Q |
64 |
agacatttgtttctttatttcagtccttaataac |
97 |
Q |
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| T |
25286670 |
agacatttgtttctttatttcagttcttaataac |
25286703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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