View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4230_high_8 (Length: 389)

Name: NF4230_high_8
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4230_high_8
NF4230_high_8
[»] chr3 (1 HSPs)
chr3 (1-373)||(12136402-12136776)
[»] scaffold0013 (2 HSPs)
scaffold0013 (256-373)||(91609-91726)
scaffold0013 (53-168)||(91405-91520)
[»] chr4 (4 HSPs)
chr4 (270-373)||(105052-105155)
chr4 (35-168)||(105234-105367)
chr4 (53-167)||(165876-165990)
chr4 (256-373)||(165682-165799)
[»] chr7 (2 HSPs)
chr7 (262-373)||(13053565-13053676)
chr7 (55-168)||(13053748-13053861)
[»] chr8 (7 HSPs)
chr8 (53-169)||(5720994-5721110)
chr8 (269-373)||(5688466-5688570)
chr8 (53-169)||(5688262-5688378)
chr8 (53-167)||(5668475-5668588)
chr8 (269-373)||(5721204-5721308)
chr8 (54-167)||(5653926-5654039)
chr8 (264-356)||(5668671-5668763)
[»] chr6 (2 HSPs)
chr6 (265-321)||(33341212-33341268)
chr6 (265-321)||(35124828-35124884)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 12136402 - 12136776
Alignment:
Q  1 aatcacaattaactaatctttcaatgaaacataaatggaaataaatttagtcgtacttgcctgaagagacaataggatattaactgaatcatataacctt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12136402 aatcaaaattaactaatctttcaatgaaacataaatggaaataaatttagtcgtacttgcctgaagagacaataggatattaactgaatcatataacctt 12136501  T
Q  101 tctggttccatcttttccccaacaatctttggaggcaacactgataaaagtaggcaacactgaaacacaa--gaatttaaccgaggttgacttcatgacc 198  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  12136502 tctggttccatcttttcccctacaatctttggaggcaacactgataaaagtaggcaacactgaaacacaaaagaatttaaccgaggttgactgcatgacc 12136601  T
Q  199 tattttgttttgatcggttaagtttattactaacaacttagattgttcacttcatgacctattttgttaattaccttcaaaccttctgcagtacaatcag 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12136602 tattttgttttgatcggttaagtttattactaacaacttagattgttcacttcatgacctattttgttaattaccttcaaaccttctgcagtacaatcag 12136701  T
Q  299 aaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgacgatgcatactcttaaaat 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12136702 aaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgacgatgcatactcttaaaat 12136776  T

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Target: scaffold0013 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 256 - 373
Target Start/End: Original strand, 91609 - 91726
Alignment:
Q  256 cctattttgttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgac 355  Q
    ||||| |||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  91609 cctatgttgttagttaccttcaaaccttctgcggtactatcagaaacttgccatccatggtcttgatcggagaaggtccatgaacctttagaaatatgac 91708  T
Q  356 gatgcatactcttaaaat 373  Q
    ||| ||||||||||||||    
T  91709 gatacatactcttaaaat 91726  T

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Target: scaffold0013; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 91405 - 91520
Alignment:
Q  53 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 152  Q
    |||| ||||||||| ||||| |||| ||| |||||||||||||||||||| ||||||||||||||||| ||| |   |||||| |||| |||||| ||||    
T  91405 gtacatgcctgaagtgacaacaggagattgactgaatcatataacctttccggttccatcttttcccccacagttgctggaggaaacattgataatagta 91504  T
Q  153 ggcaacactgaaacac 168  Q
      ||||||||||||||    
T  91505 aacaacactgaaacac 91520  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 105155 - 105052
Alignment:
Q  270 taccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgacgatgcatactctta 369  Q
    ||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105155 taccttcaaaccttcagcggtgcaatcagaaacttgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgacgatgcatactctta 105056  T
Q  370 aaat 373  Q
    ||||    
T  105055 aaat 105052  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 105367 - 105234
Alignment:
Q  35 atggaaataaatttagtcgtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggag 134  Q
    |||| |||||||||| | | |||||||||||| ||||| | || ||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  105367 atggcaataaatttaatagcacttgcctgaagcgacaacaagacattgaccgaatcatataacctttctggttccatcttttcccccacaatctctggag 105268  T
Q  135 gcaacactgataaaagtaggcaacactgaaacac 168  Q
    |||||| |||||||||||| ||||||||||||||    
T  105267 gcaacattgataaaagtagacaacactgaaacac 105234  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 165990 - 165876
Alignment:
Q  53 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 152  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||    
T  165990 gtacttgcctgaagcgacagcaggatattgactgaatcatataacctttctggttccatcttttcccccacaatctctggaggcaacattgataaatgta 165891  T
Q  153 ggcaacactgaaaca 167  Q
    | |||||||| ||||    
T  165890 gacaacactggaaca 165876  T

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Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 256 - 373
Target Start/End: Complemental strand, 165799 - 165682
Alignment:
Q  256 cctattttgttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgac 355  Q
    ||||| ||||||||||||||||| |||||||| || ||||||||||  |||||||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  165799 cctatgttgttaattaccttcaatccttctgcggtgcaatcagaaagttgccatccttggtcttgatcagagaaggtccacgagcctttagaaatatgac 165700  T
Q  356 gatgcatactcttaaaat 373  Q
    ||| ||||||||| ||||    
T  165699 gatacatactcttgaaat 165682  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 373
Target Start/End: Complemental strand, 13053676 - 13053565
Alignment:
Q  262 ttgttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgacgatgca 361  Q
    |||||| ||||||||| ||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||    
T  13053676 ttgttatttaccttcagaccatctgcggtgcaatcagaaacttgccatccatggtcttgatcggagaaagtccacgcacctttagaaatatgacgatgca 13053577  T
Q  362 tactcttaaaat 373  Q
    ||||||||||||    
T  13053576 tactcttaaaat 13053565  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 13053861 - 13053748
Alignment:
Q  55 acttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagtagg 154  Q
    |||| ||||||| ||||| || | ||| ||||||||||||||||| ||||||||||| ||||| || |||||||  |||||||||| ||||||||||||     
T  13053861 acttacctgaagtgacaacagaagattgactgaatcatataacctctctggttccatattttcacccacaatctcaggaggcaacattgataaaagtaga 13053762  T
Q  155 caacactgaaacac 168  Q
    ||||||||||||||    
T  13053761 caacactgaaacac 13053748  T

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Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 5720994 - 5721110
Alignment:
Q  53 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 152  Q
    ||||||||||||||||| || | |||||| |||||||||||||||||||| |||||||| |||||||| ||||||| ||||||||||| ||||||||| |    
T  5720994 gtacttgcctgaagagaaaacaagatattgactgaatcatataacctttcaggttccattttttcccccacaatctctggaggcaacattgataaaagca 5721093  T
Q  153 ggcaacactgaaacaca 169  Q
    | ||||||| |||||||    
T  5721094 gacaacactaaaacaca 5721110  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 269 - 373
Target Start/End: Original strand, 5688466 - 5688570
Alignment:
Q  269 ttaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgacgatgcatactctt 368  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||||||| | ||| ||||     
T  5688466 ttacctttaaaccttctgcagtgcaatcagaaacctgccatccatgatcttgatcagagaaggtccatgaccctttggagatatgacggtacatgctctc 5688565  T
Q  369 aaaat 373  Q
    |||||    
T  5688566 aaaat 5688570  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 5688262 - 5688378
Alignment:
Q  53 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 152  Q
    ||||||||||||||||| || | |||||| || ||||||||||||||||| |||||||| |||||||| |||||||  |||| ||||| ||||||||| |    
T  5688262 gtacttgcctgaagagaaaacatgatattgacggaatcatataacctttcaggttccattttttcccctacaatctccggagacaacattgataaaagca 5688361  T
Q  153 ggcaacactgaaacaca 169  Q
    | ||||||| |||||||    
T  5688362 gacaacactaaaacaca 5688378  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 5668475 - 5668588
Alignment:
Q  53 gtacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagta 152  Q
    ||||||||||||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||||| |||||||  ||||||| ||  |||||||| |    
T  5668475 gtacttgcctgaagagaaaataggatattgaccgcatcatataacctttcaggttccatcttttcccc-acaatctccggaggcagcatcgataaaagca 5668573  T
Q  153 ggcaacactgaaaca 167  Q
    | ||||||| |||||    
T  5668574 gacaacactaaaaca 5668588  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 269 - 373
Target Start/End: Original strand, 5721204 - 5721308
Alignment:
Q  269 ttaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgacgatgcatactctt 368  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| || |||||||| | ||| ||||     
T  5721204 ttacctttaaaccttctgcggtgcaatcagaaacctgccatccatgatcttgatcagagaatgtccatgaccctttggagatatgacggtacatgctctc 5721303  T
Q  369 aaaat 373  Q
    |||||    
T  5721304 aaaat 5721308  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 5653926 - 5654039
Alignment:
Q  54 tacttgcctgaagagacaataggatattaactgaatcatataacctttctggttccatcttttccccaacaatctttggaggcaacactgataaaagtag 153  Q
    ||||| ||||||| ||||| |  | ||| ||||||||||||| |||||| ||||| | | ||||||| ||||||||||||||||||| ||| ||||||||    
T  5653926 tactttcctgaagtgacaacacaaaattgactgaatcatatagcctttcgggttcaaccatttcccccacaatctttggaggcaacattgacaaaagtag 5654025  T
Q  154 gcaacactgaaaca 167  Q
     |||||||||||||    
T  5654026 acaacactgaaaca 5654039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 5668671 - 5668763
Alignment:
Q  264 gttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttgatcggagaaggtccatgagcctttagaaatatgacg 356  Q
    |||| ||||||| |||||||||||||| ||||| |||||   ||||||||| |||||||| |||||||||||||| ||||| || ||||||||    
T  5668671 gttagttacctttaaaccttctgcagtgcaatctgaaactgaccatccatgatcttgatcagagaaggtccatgaccctttggacatatgacg 5668763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 33341268 - 33341212
Alignment:
Q  265 ttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttga 321  Q
    ||||| |||||||| ||||||||||| |||||||||||  |||| |||| |||||||    
T  33341268 ttaatgaccttcaagccttctgcagtgcaatcagaaacaggccaaccattgtcttga 33341212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 35124828 - 35124884
Alignment:
Q  265 ttaattaccttcaaaccttctgcagtacaatcagaaacctgccatccatggtcttga 321  Q
    ||||| |||||||| ||||||||||| |||||||||||  |||| |||| |||||||    
T  35124828 ttaatgaccttcaagccttctgcagtgcaatcagaaacaggccaaccattgtcttga 35124884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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