View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4230_low_1 (Length: 1147)
Name: NF4230_low_1
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_1 |
 | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 19 - 715
Target Start/End: Original strand, 928492 - 929174
Alignment:
| Q |
19 |
ccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928492 |
ccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatca |
928591 |
T |
|
| Q |
119 |
atgatttcttctttggcacatggttttgaagaaataaaagtttcctccatcacagaattacttgtgtttcttttatgagttattttgaggctatttatat |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
928592 |
atgatttcttctttgccacatggttttgaagaaataaaagtttcctccatcacagaattacttttgtttcttttatgagttattttgaggctatttata- |
928690 |
T |
|
| Q |
219 |
ataaagtcatggagttgnnnnnnnnnnnnctagaatgaaaggaagttacatggaacatggaacatgggatcaagcaagaaaagggtattaaggggattcc |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928691 |
---aagtcatggagttgaaaaaagaaaaactagaatgaaaggaagttacatggaacatggaacatgggatcaagcaagaaaagggtattaaggggattcc |
928787 |
T |
|
| Q |
319 |
aagattgctttctgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttattgggatccaaatcaatgttnnnnnnntagggtcaaatagt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
928788 |
aagattgctttctgtcggtgtgtgtctaccatgtttgacttgacttgactatgtgtttaatgggatccaaatcaatgttaaaaaaatagggttaaatagt |
928887 |
T |
|
| Q |
419 |
gaaacattatcatatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaa |
518 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928888 |
gaaacat-----tatcatatgattttgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaa |
928982 |
T |
|
| Q |
519 |
atgaacaatgcacttaaaattacattcaaatatataccc--gtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccaca |
616 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928983 |
atgaacaatgcacttaaa---acattcaaatatatacccctgtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccaca |
929079 |
T |
|
| Q |
617 |
aattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgactagcaagcaacggagaaacacatcat |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
929080 |
aattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctcctgact----agcaacggagaaacacatcat |
929174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 8e-92
Query Start/End: Original strand, 956 - 1139
Target Start/End: Original strand, 929746 - 929929
Alignment:
| Q |
956 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagcaaaatgcattagattgtatccatc |
1055 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
929746 |
aaccattttaatatgcgacactatgccgcttacattcattgagtttccttcaaagataatttgatttctacctagaaaaatgcattagattgtatccatc |
929845 |
T |
|
| Q |
1056 |
catacacgataaatgtgagaatttcctacctttcttcccacctttgataccacaatgttgcaaaaattgagagcacaggttctg |
1139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
929846 |
catacacgataaatgtgagaatttcctacctttcttaccacctttgataccacaatgttgcaaaaattgagagcacgggttctg |
929929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 926179 - 926324
Alignment:
| Q |
26 |
cagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgat-- |
123 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
926179 |
cagaacttggccactttttcatcagtctgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcgatgatct |
926278 |
T |
|
| Q |
124 |
-ttcttctttggcacatggttttgaagaaataaaagtttcctccat |
168 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
926279 |
cttcttctttggcacatggtttggaggaaataaaagtttcttccat |
926324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 939417 - 939605
Alignment:
| Q |
19 |
ccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatca |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| ||||| | |||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
939417 |
ccaagagcagaacttggccactttttcatcagttctccataccatgagatcatcaaggtcagaaagatgaaaaggtcggagtgtgatttggttcaaatca |
939516 |
T |
|
| Q |
119 |
atgatttcttctttggcacatggttttgaagaaataaaagtttcctccatcacaga--attacttgtgtttcttttatgagttattttg |
205 |
Q |
| |
|
||| ||| ||| ||| ||| |||||| ||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||| |||| |
|
|
| T |
939517 |
atgctttgttcattgccacttggtttggaagaaataaaagtttcctccataacagaacaacacttgtgtttcttttctgagttaatttg |
939605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 935632 - 935740
Alignment:
| Q |
26 |
cagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgattt |
125 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
935632 |
cagaacttggccactttttcatcagtgtgccacaccatgagatcatcgaggtcagaaagattaaaagatcggagtgtgatttggttcaaatcaatgatct |
935731 |
T |
|
| Q |
126 |
cttctttgg |
134 |
Q |
| |
|
||||||||| |
|
|
| T |
935732 |
cttctttgg |
935740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 708 - 792
Target Start/End: Original strand, 929256 - 929340
Alignment:
| Q |
708 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgaataaga |
792 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
929256 |
cacaacatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgagtaaga |
929340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 787 - 866
Target Start/End: Original strand, 929362 - 929441
Alignment:
| Q |
787 |
ataagaaacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
866 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
929362 |
ataaaaaacagtaagacgatgaaataagtcacaattaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
929441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 924137 - 924287
Alignment:
| Q |
19 |
ccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatca |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| | ||| | ||||||||||||||||||||||| || |||||||||||||||| | | |||| |
|
|
| T |
924137 |
ccaagagcagaacttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaaggggtcggagtgtgatttgggttagatca |
924236 |
T |
|
| Q |
119 |
atgatttcttctttggcacatggttttgaagaaataaaagtttcctccatc |
169 |
Q |
| |
|
|| | ||||||||||||| |||||| ||||||||| ||||| ||||||| |
|
|
| T |
924237 |
attctctcttctttggcacctggtttggaagaaatagaagttatctccatc |
924287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 765 - 861
Target Start/End: Complemental strand, 1201614 - 1201514
Alignment:
| Q |
765 |
tgaaacattaaagaaagtccgaataaga----aacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgta |
860 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||||||||| ||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1201614 |
tgaaacattaaagataatctgaataagattaaaacagtaagacaatgcaataactcacaatcaggacctcgtgaagtttttgtatgatatgaaaaatgta |
1201515 |
T |
|
| Q |
861 |
t |
861 |
Q |
| |
|
| |
|
|
| T |
1201514 |
t |
1201514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 708 - 764
Target Start/End: Complemental strand, 1201696 - 1201640
Alignment:
| Q |
708 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttc |
764 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
1201696 |
cacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttc |
1201640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 943
Target Start/End: Original strand, 929642 - 929676
Alignment:
| Q |
909 |
ataaccgtttaacggtttagtcctcgattccatcc |
943 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
929642 |
ataacagtttaacggtttagtcctcgattccatcc |
929676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1065 - 1127
Target Start/End: Complemental strand, 24981 - 24919
Alignment:
| Q |
1065 |
taaatgtgagaatttcctacctttcttcccacctttgataccacaatgttgcaaaaattgaga |
1127 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
24981 |
taaatgtgagcatttcctatctttcttaccacctttgataccacagtgttgcaataaatgaga |
24919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University