View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_10 (Length: 437)
Name: NF4230_low_10
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 33 - 418
Target Start/End: Complemental strand, 34930294 - 34929911
Alignment:
| Q |
33 |
atcaaataacattgtaccctctttaactcattatttaatccaataattttgcaacctttttactgtttttgttactcaatatttttgtaataataagata |
132 |
Q |
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| T |
34930294 |
atcaaataacattgtaccctcattaactcattatttaatccaataattttgcaacctttctactgtttttattactcaatatttttgtaataataagata |
34930195 |
T |
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| Q |
133 |
ttagcatactaccatatctattgggaaaaccgcgtagaagtgtcaaatctaatataatatgccaagctagtttgtcacaaaaatcccacaggtaatttat |
232 |
Q |
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| T |
34930194 |
ttagcatactaccatatctattgggaaaactgcgtagaagtgtcaaatctaatataatatgccaagctaatttgtcac-aaaatcccacaggtaatttat |
34930096 |
T |
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| Q |
233 |
gaaatgttcttacaaaattgacttaaaatgtagtgacttagcttaataagtctaataacaaatgtttaagactatgccnnnnnnnnnnnnnggataaatt |
332 |
Q |
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| T |
34930095 |
gaaatgttcttacaaaattgactaaaaatgtagtgacttagctcaat-agtctaataacaaatgtttaagactatgtcaaaaaaaaaattaggataaatt |
34929997 |
T |
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| Q |
333 |
aatattttgcctttgattttctagttcttgaatatggagttcttgatatttccattttgttaagaatttgaaggcccaggagtgga |
418 |
Q |
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| T |
34929996 |
aatattttgcctttgattttctagttcttgaatatggagttattgatatttccattttgttaagaatttgaaggcccaggagtgga |
34929911 |
T |
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