View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_11 (Length: 434)
Name: NF4230_low_11
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 4 - 420
Target Start/End: Complemental strand, 2646900 - 2646477
Alignment:
| Q |
4 |
atacttggaatttgtataaatttgtatcagtatgtgtaacttctatattacctttaagaaagtgtgaatttgaa----------tcatatcttcttaatt |
93 |
Q |
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| T |
2646900 |
atacttggaatttgtataaattttgatcagtatgtgtaacttctatatttc-tttaagaaagtgcaaatttgaaaacagtaatatcctatcttcttaatt |
2646802 |
T |
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| Q |
94 |
tatttattcttgcttacctgtatgctagattggcacatgaatggcaagcattcatatctcgtactcacaagttgaggaaaacatttgtatctgtgaaagg |
193 |
Q |
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| T |
2646801 |
tatttattcttgcttacctat-tgctagattggcacatgaatggcaagcattcatatctcgtactcacaagttgaggaaaacatttgtatctgtgaaagg |
2646703 |
T |
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| Q |
194 |
catatactaccaggtatcaattgtgggatttgtaatgtttgtattaaaagaaattgtacatgttatatggatatggattaattatgtttttgtgcaggct |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2646702 |
catatactaccaggtatcaattgtgggatttgtaatgtttgtaataaaa-aaattgtacatgttatatggatatggattaattctgtttttgtgcaggct |
2646604 |
T |
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| Q |
294 |
gaggttgagggtcagacaataacatggttaactcctcatttactacaacaggttgtgtctgatgatgttgacatgcctaccatgctaaattttctgcaat |
393 |
Q |
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| T |
2646603 |
gaggttgagggtcagacaataacatggttaactcctcatttactacaacaggttgtgtctgatgatgttgacatgcttaccatgctaaattttctgcaat |
2646504 |
T |
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| Q |
394 |
tttatgaggtcggtttcatattaatgt |
420 |
Q |
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| T |
2646503 |
tttacgaggttggtttcatattaatgt |
2646477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 7894912 - 7894793
Alignment:
| Q |
301 |
agggtcagacaataacatggttaactcctcatttactacaacaggttgtgtctgatgatgttgacatgcctaccatgctaaattttctgcaattttatga |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
7894912 |
agggtctgacaataacatggttaactcctcatttactacaacaggttgtgtccgatgatgttgacattcctaccatgctaatttttttgcaattttatga |
7894813 |
T |
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| Q |
401 |
ggtcggtttcatattaatgt |
420 |
Q |
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||| |||||||||||||||| |
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| T |
7894812 |
ggttggtttcatattaatgt |
7894793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 7889674 - 7889601
Alignment:
| Q |
4 |
atacttggaatttgtataaatttgtatcagtatgtgtaacttctatattacctttaagaaagtgtgaatttgaa |
77 |
Q |
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| T |
7889674 |
atacttggaatttgtaaaaaatttgatcattatttgtaacttctatatttcctttaagaaagtgcaaatttgaa |
7889601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 7894982 - 7894934
Alignment:
| Q |
4 |
atacttggaatttgtataaatttgtatcagtatgtgtaacttctatatt |
52 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
7894982 |
atacttggaatttgtataaattttgatcattatgtgtaacttctatatt |
7894934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 274 - 409
Target Start/End: Original strand, 40202582 - 40202718
Alignment:
| Q |
274 |
attatgtt-tttgtgcaggctgaggttgagggtcagacaataacatggttaactcctcatttactacaacaggttgtgtctgatgatgttgacatgccta |
372 |
Q |
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|||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||| |||| |
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| T |
40202582 |
attatgttgtttgtgcaggctgaagttgagggtcagaaaataacatggttaactcctcattcactgcagcaggttgtgtctgaggatgttgacatcccta |
40202681 |
T |
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| Q |
373 |
ccatgctaaattttctgcaattttatgaggtcggttt |
409 |
Q |
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| T |
40202682 |
ctatgctaaactttctgcaactctatgaggtcagttt |
40202718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 40202430 - 40202521
Alignment:
| Q |
118 |
ctagattggcacatgaatggcaagcattcatatctcgtactcacaagttgaggaaaacatttgtatctgtgaaaggcatatactaccaggta |
209 |
Q |
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| T |
40202430 |
ctagattggcgcatgaatggcaagcatttgtatctcgtactcacaagttaagaaaaacatttgtatctgttaaaggcatatactaccaggta |
40202521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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