View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4230_low_12 (Length: 420)

Name: NF4230_low_12
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4230_low_12
NF4230_low_12
[»] chr7 (3 HSPs)
chr7 (1-404)||(36724513-36724916)
chr7 (126-404)||(716813-717096)
chr7 (1-223)||(711791-712012)
[»] chr8 (1 HSPs)
chr8 (2-401)||(14540018-14540422)
[»] chr2 (2 HSPs)
chr2 (123-390)||(36473564-36473831)
chr2 (314-386)||(29094663-29094735)
[»] chr5 (4 HSPs)
chr5 (2-60)||(8267003-8267061)
chr5 (308-356)||(12715536-12715584)
chr5 (308-356)||(12776767-12776815)
chr5 (140-193)||(29984959-29985012)


Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 36724513 - 36724916
Alignment:
Q  1 ctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtttagggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  36724513 ctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggcgttttacatcgaattatttcctggctgtttagattcggctagtttagggt 36724612  T
Q  101 aacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctt 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  36724613 aacgggagctccatgaccactgcagataatttgagccgatctccaattctcaagaagatgcgttgctcgttcaaccacctgcatatttgtttcgttcctt 36724712  T
Q  201 tgctggcaaagtttcaagttcctctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagac 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36724713 tgctggcaaagtttcaagttcctctctttcataaactccataaaactgtggtaaagagtttactttggctcgggctaagctggtgtaaaagggtaaagac 36724812  T
Q  301 aaccacgtccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36724813 aaccacgtccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaaga 36724912  T
Q  401 acat 404  Q
    ||||    
T  36724913 acat 36724916  T

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Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 126 - 404
Target Start/End: Complemental strand, 717096 - 716813
Alignment:
Q  126 ataatttgagccaatctccaatcctc-aagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcct- 223  Q
    |||||||||||  |||||||||| || |||||| || | | | ||||||||||||||||| |||||||| ||| |||||   |||||||||||||||||     
T  717096 ataatttgagctgatctccaatcttccaagaaggtgtgatgctcgttcaaccacctgcatgtttgtttcattcttttgccaccaaagtttcaagttcctt 716997  T
Q  224 ctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataatttt 323  Q
    || || |||||||||||||||| ||| | |||||||| ||||||||||  || ||||||||| | |||||||||||| ||||| || |||||||||||||    
T  716996 ctcttccataaactccataaaaatgttgcaaagagttcactttggctcgagccaagctggtgcagaagggtaaagaccaccacatctatattataatttt 716897  T
Q  324 ggcgtagaatt---ctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacat 404  Q
     ||| ||||||   ||| |||||||||||||||||| |||||||  |||||||  |||||||||||||||||||||||||||||    
T  716896 cgcgaagaattatactaccaattttgtcccataaattcacatcactccaaaccaacacaacattaggacactcgagaagaacat 716813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 712012 - 711791
Alignment:
Q  1 ctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtttagggt 100  Q
    ||||||||||||||| |||| ||||||| ||||||||   ||| | ||||||||||||  ||| ||||||||| || ||| ||| |   | ||||  | |    
T  712012 ctgaagaaaatgagg-atcactattgcacttgtaacgtctgagtgttggctttttccacggaactatttcctaactattttgatccaattggtttctgtt 711914  T
Q  101 aacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctt 200  Q
    |||||| |||||| |||  |  |||||||||||| ||  | || ||||||| ||||| ||| || | ||||||||||||||||| |||||||||||| ||    
T  711913 aacgggtgctccacgactgcctcagataatttgacccggtatctaatcctcgagaaggtgcattgctcgttcaaccacctgcatgtttgtttcgttcttt 711814  T
Q  201 tgctggcaaagtttcaagttcct 223  Q
    ||||| ||| |||||||||||||    
T  711813 tgctgccaaggtttcaagttcct 711791  T

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Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 2 - 401
Target Start/End: Complemental strand, 14540422 - 14540018
Alignment:
Q  2 tgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtttagggta 101  Q
    |||||||||||||||||| ||||||||||||||| |   ||| |||||||||| ||| | || | || |||  ||||||||||  || | |||   | |     
T  14540422 tgaagaaaatgaggcatcgatattgcatttgtaatgcctgagtgctggcttttcccacccaactgttacctgactgtttagatctggttggttcctgatg 14540323  T
Q  102 acgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttccttt 201  Q
    ||||  | |||  |||||| | | |||||||||||| ||||||||||||||||||| || ||| | |||||| |||||||| ||||||||| |||| |||    
T  14540322 acggacgttccgcgaccaccgaaaataatttgagccgatctccaatcctcaagaaggtgtgttgctcgttcacccacctgcgtatttgttttgttctttt 14540223  T
Q  202 gctggcaaagtttcaagtt-cctctatttcataaactccataaaactgtggtaaaga---gtttactttggctcaggctaagctggtgtaaaagggtaaa 297  Q
    |||| ||||||||| ||||   ||  || |||||||||||||||||| ||| |||||   ||| ||||| |||||| ||||||||||||| |||||||||    
T  14540222 gctgccaaagtttccagttatttcccttccataaactccataaaactatggcaaagagttgttcacttttgctcagactaagctggtgtagaagggtaaa 14540123  T
Q  298 gacaaccacgtccatattataattttggcgtagaattctatcaa-ttttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgag 396  Q
    ||| ||||||||||||||||||||||| || ||||||||||||| |||| |||| || || || |||||||||||||| ||||| |||||||||||||||    
T  14540122 gaccaccacgtccatattataattttgacgaagaattctatcaatttttttcccgtagattcatatcatgccaaacctacacaatattaggacactcgag 14540023  T
Q  397 aagaa 401  Q
    |||||    
T  14540022 aagaa 14540018  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 390
Target Start/End: Complemental strand, 36473831 - 36473564
Alignment:
Q  123 cagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgctggcaaagtttcaagttcc 222  Q
    ||||||||||||||| || |  |||| | ||||| ||| ||| | |||||||||||||||||||| ||||| ||| |||| || ||||| ||||| |||     
T  36473831 cagataatttgagccgattttaaatctttaagaaaatgtgttgctcgttcaaccacctgcatattcgtttcattcttttgttgccaaagcttcaaattca 36473732  T
Q  223 t-ctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataatt 321  Q
    | || ||||| ||||||||||||||  | | ||| |||| |||||||||     |||| || || || || | ||| |  ||| | ||||||||||||||    
T  36473731 ttctctttcaaaaactccataaaacactagcaaaaagttcactttggctagcagtaagttgttgcaagagagaaaa-atgaccgcatccatattataatt 36473633  T
Q  322 ttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggaca 390  Q
    |||| | || | |||||||||  | ||||| ||||  |||||| |||||||||||||||||||||||||    
T  36473632 ttggtgaagtactctatcaatactttcccacaaatttacatcacgccaaacctgcacaacattaggaca 36473564  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 29094663 - 29094735
Alignment:
Q  314 ttataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattag 386  Q
    |||||||||||||| | ||  ||||  |||||||||||||||| ||||||||||||  |||| ||||| ||||    
T  29094663 ttataattttggcgcataacgctatttattttgtcccataaattcacatcatgccacgcctgaacaactttag 29094735  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 8267061 - 8267003
Alignment:
Q  2 tgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatc 60  Q
    ||||||||| || |||||||||||||||||||||||||||   |||||||||| |||||    
T  8267061 tgaagaaaacgaagcatcaatattgcatttgtaacggtcggttgctggcttttcccatc 8267003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 12715536 - 12715584
Alignment:
Q  308 tccatattataattttggcgtagaattctatcaattttgtcccataaat 356  Q
    |||||||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  12715536 tccatattataatttttgcgaagagttctatcaattgtgtcccataaat 12715584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 12776767 - 12776815
Alignment:
Q  308 tccatattataattttggcgtagaattctatcaattttgtcccataaat 356  Q
    |||||||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  12776767 tccatattataatttttgcgaagagttctatcaattgtgtcccataaat 12776815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 29985012 - 29984959
Alignment:
Q  140 tctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttc 193  Q
    |||||| || ||||||||||| ||  |||||||||| |||||||||||||||||    
T  29985012 tctccattcatcaagaagatgtgtagcacgttcaacaacctgcatatttgtttc 29984959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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