View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_17 (Length: 357)
Name: NF4230_low_17
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 40726001 - 40725751
Alignment:
| Q |
21 |
gtgcgcactctatctaggtttcaactttttctcccgccaattttgcctctgctaatgtgcatccttccttctacacctacttcgtagatttgtgtacttt |
120 |
Q |
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| T |
40726001 |
gtgcgcactctatctaggtttcaactttttctcccgccaattttgcctctgctaatgtgcatccttccttctacacctacttcgtagatttgtgtacttt |
40725902 |
T |
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| Q |
121 |
cttttttcctagtctaatactccattttattttactacaaagagtaacatatat----------tcacaaacccaaaatatattatttgggcatacatgc |
210 |
Q |
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| T |
40725901 |
cttttttcctagtctaatactccattttattttactacaaagagcaacatatatacttgcttggtctcaaacccaaaatatattatttgggcatacatgc |
40725802 |
T |
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| Q |
211 |
aaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgatgtggttaaataa |
272 |
Q |
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| T |
40725801 |
aaaacc-----------aaaagaaaatacaattgaataatatcaattgatgtgattaaataa |
40725751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 48682011 - 48682075
Alignment:
| Q |
194 |
tatttgggcatacatgcaaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgat |
260 |
Q |
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| T |
48682011 |
tatttaggcatacacacaaaatcataa--aaaataaaagaaaataaaattgaataatgtcagttgat |
48682075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 39922543 - 39922463
Alignment:
| Q |
190 |
atattatttgggcatacatgcaaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgatgtggttaaataa |
272 |
Q |
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| T |
39922543 |
atattatttgatcataca--caaaactaaaagaaaaataaaagagaatacaattgaataatatcaatcgatgtgactaaataa |
39922463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 28433627 - 28433688
Alignment:
| Q |
194 |
tatttgggcatacatgcaaaaccataagaaaaataaaagaaaatacaattgaataatgtcaat |
256 |
Q |
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| T |
28433627 |
tatttgggcatgcacacaaaaccataa-aaaaatataagagaataaaattgaataatgtcaat |
28433688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 16598655 - 16598589
Alignment:
| Q |
194 |
tatttgggcatacatgcaaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgat |
260 |
Q |
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| T |
16598655 |
tatttgggcatactcacaaaactaaaagaaaaatataagagaacaaaattgaataatgtcaattgat |
16598589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 13719354 - 13719302
Alignment:
| Q |
205 |
acatgcaaaaccataagaaaaa-taaaagaaaatacaattgaataatgtcaat |
256 |
Q |
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| T |
13719354 |
acatacaaaaccaaaagaaaaaataaaagagaacacaattgaataatgtcaat |
13719302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 5589184 - 5589245
Alignment:
| Q |
210 |
caaaaccataagaaaaataaaagaaaatacaattgaataatgtcaattgatgtggttaaata |
271 |
Q |
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| T |
5589184 |
caaaatcaaaagaaaaataaaagagaacaaaattgaataatgtcatttgatttgattaaata |
5589245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 33085685 - 33085637
Alignment:
| Q |
222 |
aaaaataaaagaaaatacaattgaataatgtcaattgatgtggttaaat |
270 |
Q |
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|||| ||||||| |||| ||||||||||| |||||||||||| |||||| |
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| T |
33085685 |
aaaattaaaagagaataaaattgaataatctcaattgatgtgattaaat |
33085637 |
T |
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