View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_19 (Length: 336)
Name: NF4230_low_19
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 8568323 - 8568625
Alignment:
| Q |
12 |
agagaaaagttgaaagcatctttagcagagatgaaagtagtattatctttgaaaccatatttgattttgatgtattgcctaagagtgttatcgttgttga |
111 |
Q |
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| T |
8568323 |
agagaaaagttgaaagcatctttagcagagatgaaagtagtattatctttgaaaccatatttgattttgatgtattgcctaagagtgttatcgttgttga |
8568422 |
T |
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| Q |
112 |
ggataatagaaggaatgatgatttccagggaaaatgaatcatgatgagagtgatagccttgacgtttaaccatatcagaaatgagaagagggacatttgt |
211 |
Q |
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| T |
8568423 |
ggataatagaaggaatgattatttccagggaaaaggaatcatgatgagagtgatagccttgacgtttaaccatatcagaaatgagaagagggacatttg- |
8568521 |
T |
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| Q |
212 |
attattattattatcatcgtgaaacctaaactgaaggatccctaagcaaagggtgcagagtttattattatcatcatatgttggtgatagggatgtaaaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8568522 |
--tattattattatcatcgtgaaacctaaactgaaggatccctaagcaaagggtgcagagtttattattatcaccatatgttggtgatagggatgtaaaa |
8568619 |
T |
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| Q |
312 |
gcatag |
317 |
Q |
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|||||| |
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| T |
8568620 |
gcatag |
8568625 |
T |
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