View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_2 (Length: 839)
Name: NF4230_low_2
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 36038031 - 36038450
Alignment:
| Q |
19 |
ggaatatacaaagaagatttatcttgatagccaaaatgttaaattagacattagaaggttcagaaaaaggttgcatagagcctatgagtacacagtcctt |
118 |
Q |
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| T |
36038031 |
ggaatatacgaagaagatttatcttgatagccaaaatgttaaattagaccttagaaggttcagaaaaaggttgcatagagcctatgagtacacaatcctt |
36038130 |
T |
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| Q |
119 |
agatcaaatctgaaccttcaacaccaaccactgtgaattttcccattccacggtttcatttannnnnnnatgaacattctttaatgtaaaaaacttagtt |
218 |
Q |
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| T |
36038131 |
agatcaaatctgaaccttcaacaccaaccactgtgaattttcccattccacggtttcatttatttttttatgaacattctttaatgtaaaaaacttagtt |
36038230 |
T |
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| Q |
219 |
tgttttgaaatgtaaaatattcttatacatatagtgacaacctgaaaatttcttagtgtgatatggtgtgtatactaggatatctgtaattaaaagctga |
318 |
Q |
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| T |
36038231 |
tgttttgaaatgtaaaatattcttaaacatatagtgacaacctgaaaatttcttaatgtgatatggtgtgtatactaggatatctgtaattaaaagctga |
36038330 |
T |
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| Q |
319 |
aat---ttgttattctgtcatttttggtgtgttaatacttgtgtagcattgtttacttcaaatcaattgtccaatgtgggtggtctcaaattctatttag |
415 |
Q |
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| T |
36038331 |
aatttgttgttattctgtcatttttggtgtgttaatacttgtgtaacattgtttacttcaaatcaattgtccaatgtgggtggtctcaaattctatttag |
36038430 |
T |
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| Q |
416 |
agtttaaggttgatcatgat |
435 |
Q |
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| T |
36038431 |
agtttaaggttgatcatgat |
36038450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 593 - 828
Target Start/End: Original strand, 36038452 - 36038686
Alignment:
| Q |
593 |
atgaaaaggatgtctttgattccaaacttgcgttcctgtataacataagccaagccagaaggcaccaaccaggatatgtcaccatccaagacatgaaact |
692 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36038452 |
atgaaaaggatgtctttgattccaaacttgcgttcctgtataacataagccaagccagaaggcaccaaccaggatatgtcaccatccaagacatgaa-ct |
36038550 |
T |
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| Q |
693 |
attgtgaggtgaaattctaaaatcctctcactaattattgtcttaacaagctcaattaattgggattgtgcaacaatttctatatataatactagttgta |
792 |
Q |
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| T |
36038551 |
attgtgaggtgaaattctaaaatcctctcactaattattgtcttaacaagctcaattaattgggattgtgcaaaaatttctatatataatactagttgta |
36038650 |
T |
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| Q |
793 |
cgataccgaagatctatctacctagcttcacaggtt |
828 |
Q |
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| T |
36038651 |
cgatactgaagatctatctacctagcttcacaggtt |
36038686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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