View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_20 (Length: 328)
Name: NF4230_low_20
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 45113219 - 45113462
Alignment:
| Q |
7 |
gtgagatgaatcttgacaattatcttagaccaataaatgattttcttcctgatgtcaaagtgaaagtgttggagaataatatactcatttacatcaattg |
106 |
Q |
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| T |
45113219 |
gtgaaatgaatcttgacaattatcttagaccaataaataattttcttcctgatgtcaaagtgaaagtgttggagaataatatactcatttacatcaattg |
45113318 |
T |
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| Q |
107 |
tgagaaggaaaatggcattcaacacaaaatattggacatgcttcaaaatcttcatttgtttgtcaccagcactagcgtattgccgtttggcaattcaact |
206 |
Q |
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| T |
45113319 |
tgagaaggaaaatggcattcaacacaaaatattggacatgcttcaaaatcttcatttgtttgtcaccagcactagcatattgccgtttggcaattcaact |
45113418 |
T |
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| Q |
207 |
cttgccataactatcatcgctcaagtatgcatctctaaactttt |
250 |
Q |
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| T |
45113419 |
cttggcattactatcatcgctcaagtatgcatctctaaactttt |
45113462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 45124502 - 45124752
Alignment:
| Q |
7 |
gtgagatgaatcttgacaattatcttagaccaataaatgattttcttcctgatgtcaaagtgaaagtgttggagaataatatactcatttacatcaattg |
106 |
Q |
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| T |
45124502 |
gtgaaatgaatcttgacaattgttttagaccaa---atgaattgcttccagatgtcaaagtgaaagtgtcggagaataatatactcatttatatcaattg |
45124598 |
T |
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| Q |
107 |
tgagaaggaaaatggcattcaacacaaaatattggacatgcttcaaaatcttcatttgtttgtcaccagcactagcgtattgccgtttggcaattcaact |
206 |
Q |
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| T |
45124599 |
tgagaaggaaaatggcattcaacacaaaatattggacatgcttcaaaatcttcatttgtttgtcaccagcactagcgtattgccgtttggcaattcaact |
45124698 |
T |
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| Q |
207 |
cttgccataactatcatcgctcaagtatgcatctctaaacttttcatgctatac |
260 |
Q |
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| T |
45124699 |
cttgccataactatcatcgctcaagtatgcatctctaaacttttcatgctatac |
45124752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 45105814 - 45105970
Alignment:
| Q |
54 |
cctgatgtcaaagtgaaagtgttggagaataatatactcatttacatcaattgtgagaaggaaaatggcattcaacacaaaatattggacatgcttcaaa |
153 |
Q |
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| T |
45105814 |
cctgatgtcaaagcaagagtgttggaaaatgaagtactcattgagatccattgtgagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaa |
45105913 |
T |
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| Q |
154 |
atcttcatttgtttgtcaccagcactagcgtattgccgtttggcaattcaactcttg |
210 |
Q |
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| T |
45105914 |
atcttcatcttattgtcactgccagcagtgtatttccttttgggaattcaactcttg |
45105970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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