View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_27 (Length: 240)
Name: NF4230_low_27
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_27 |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 25628497 - 25628719
Alignment:
| Q |
18 |
aacttttacatctaagtattattgtactgtccagattaattattttagggctgtttattttttataattaaaattttgatgaggagatagagaccaatgt |
117 |
Q |
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| T |
25628497 |
aacttttacatctaagtattattgtactgtccagattaattattttagcgctgtttattttttataattaaaattttgattaggagatagagaccaatgt |
25628596 |
T |
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| Q |
118 |
aaggtcattcagaaccaataatttcattgaaaagttattataaaattcatgtataatctagtaataacagaattgtagactaacatccaagtacattttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25628597 |
aaggtcattcagaaccaataatttcattgaaaagttattataaaattcatgtataatctagtaataacagaattgtagactaacatccaagtacattttg |
25628696 |
T |
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| Q |
218 |
tgaacaaaaaatctaaccatcct |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
25628697 |
tgaacaaaaaatctaaccatcct |
25628719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 24895313 - 24895149
Alignment:
| Q |
18 |
aacttttacatctaagtattattgtactgtccagattaattattttagggctgtttattttttataattaaaattttgatgaggagatagagaccaatgt |
117 |
Q |
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||||||||||||||||||| | ||| |||||| || |||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
24895313 |
aacttttacatctaagtatcaacgtaatgtccaagttcattattttggggctatttattttttataattaaaattttgattaggagatagtgaccaatgt |
24895214 |
T |
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| Q |
118 |
aaggtcattcagaaccaataatttcattgaaaagttattataaaattcatgtataatctagtaat |
182 |
Q |
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| T |
24895213 |
aaggtcattgggaaccaataatttcattgaaaagttactataaaattctagtataatctagtaat |
24895149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 25326405 - 25326463
Alignment:
| Q |
184 |
acagaattgtagactaacatccaagtacattttg--tgaacaaaaaatctaaccatcct |
240 |
Q |
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| T |
25326405 |
acagaactgtagactaacatccaagtacattttgtatgaacaaaaaatctaaccatcct |
25326463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 25326366 - 25326405
Alignment:
| Q |
115 |
tgtaaggtcattcagaaccaataatttcattgaaaagtta |
154 |
Q |
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| T |
25326366 |
tgtaagttcattgagaaccaataatttcattgaaaagtta |
25326405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 24895148 - 24895107
Alignment:
| Q |
198 |
taacatccaagtacattt-tgtgaacaaaaaatctaaccatc |
238 |
Q |
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| T |
24895148 |
taacatccaagtacatttgtatgaacaaaaaatctaaccatc |
24895107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 31653 - 31425
Alignment:
| Q |
18 |
aacttttacatctaagtattattgtactgtccagattaattattttagggctgtttattttttataattaaaattttgatgaggagatagagaccaatgt |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
31653 |
aacttttacatctaagtattattgtactgtccaagttaattattttggggctatttattttttataattaaaattttgattagaagatagagaccaatgt |
31554 |
T |
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| Q |
118 |
aaggtcattcagaaccaataatttcattgaaaagttattataaaattcatgtataatctagtaataac----agaattgtagactaacatccaagtacat |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | || |||||||||||||||||||||| |
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| T |
31553 |
aaggtcattgagaaccaataatttcattgaaaagttattataaaattcaagtataatctagtaattacatatataacagtagactaacatccaagtacat |
31454 |
T |
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| Q |
214 |
tttg--tgaacaaaaaatctaaccatcct |
240 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
31453 |
tttgtatgaacaaaaaatctaaccatcct |
31425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 516 - 471
Alignment:
| Q |
18 |
aacttttacatctaagtattattgtactgtccagattaattatttt |
63 |
Q |
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| T |
516 |
aacttttacatctaagtattattgtaccgtcaagattaattttttt |
471 |
T |
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