View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_29 (Length: 237)
Name: NF4230_low_29
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_29 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 10125534 - 10125770
Alignment:
| Q |
1 |
cacatatgatttaggtgcttttcagttgctccaacttcaagaagaactcagcaagcaatttaaaacaagtggtagttgccctgaaaatgttgactcccat |
100 |
Q |
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| T |
10125534 |
cacatatgatttaggtgcttttcagttgctccaacttcaagaagaactcagcaagcaatttaaaacaagtggtagttgccctgaaaatgttgactcccat |
10125633 |
T |
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| Q |
101 |
attcgtcttaataaagacactttgttgaattctttgtggaagttgaatgtagtggacatagaagtaacccttgcacacgtgtgtcaaatggtaagttctt |
200 |
Q |
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| T |
10125634 |
attcgtcttaataaagacactttgttgaattctttgtggaagttgaatgtagtggacatagaagtaacccttgcacacgtgtgtcaaatggtaagttctt |
10125733 |
T |
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| Q |
201 |
aatgcgttttaattacatataacaaaacactttattc |
237 |
Q |
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| T |
10125734 |
aatgcgttttaattacatataacaaaacactttattc |
10125770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10118936 - 10119143
Alignment:
| Q |
1 |
cacatatgatttaggtgcttttcagttgctccaacttcaagaagaactcagcaagcaatttaaaacaagtggtagttgccctgaaaatgttgactcccat |
100 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||| | |||| ||||||||||||| |||||||||||||| ||| |
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| T |
10118936 |
cacatatgatttaggtgcttatcagttgttccaacttcaaaaagaactccgcaagcaatctgaaacgggtggtagttgccccgaaaatgttgactcacat |
10119035 |
T |
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| Q |
101 |
attcgtcttaataa--agacactt-tgttgaattctttgtggaagttgaatgtagtggacatagaagtaacccttgcacacgtgtgtcaaatggtaagtt |
197 |
Q |
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| T |
10119036 |
attcgtcctgatcaggagacatttatattgaattctttgtggaagataaatgtagcagacatagaagtaacccttgcacacgtgtgtcaaatggtgagtt |
10119135 |
T |
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| Q |
198 |
cttaatgc |
205 |
Q |
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| T |
10119136 |
cttaatgc |
10119143 |
T |
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