View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4230_low_3 (Length: 687)
Name: NF4230_low_3
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_3 |
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| [»] scaffold0006 (5 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 590; Significance: 0; HSPs: 5)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 677
Target Start/End: Original strand, 130593 - 131249
Alignment:
| Q |
18 |
gtttgtacttgtcaacattcaataataaaataattattcattgtcaatatttatctcatatcatacataggatttcaacaaggaattatggggatttcat |
117 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
130593 |
gtttgtacttgtcgacatgcaataataaaatcattattcattttcaatatttatctcatatcatacttaggatttcaacaaggaatgatggggatttcat |
130692 |
T |
|
| Q |
118 |
aagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
130693 |
aagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtg |
130792 |
T |
|
| Q |
218 |
gtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130793 |
gtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcat |
130892 |
T |
|
| Q |
318 |
caatctcctctacgcaaaatttccttatcatatatcttcttcagaaaatcaataaattgactacttccatgttcttttgtactttctcacattgtgcaga |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
130893 |
caatctcctctatgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactagttccatgttcttttgtactttttcacattgtgcaga |
130992 |
T |
|
| Q |
418 |
accttctaatgataacttcctgctaaaagtgacaataagaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttca |
517 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130993 |
acctgctaatgataacttcctgctaaaagcgacaataagaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttca |
131092 |
T |
|
| Q |
518 |
tgccattaaacaatattgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatat |
617 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
131093 |
tgccattaaac---attgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatat |
131189 |
T |
|
| Q |
618 |
aggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcgctctctgtg |
677 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
131190 |
aggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcactctctgtg |
131249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 130 - 328
Target Start/End: Original strand, 81993 - 82193
Alignment:
| Q |
130 |
aaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcg |
229 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
81993 |
aaaacaagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacg |
82092 |
T |
|
| Q |
230 |
aaattcta--acgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcatcaatctcctc |
327 |
Q |
| |
|
|||||| | | || | |||||| || || |||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| |
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| T |
82093 |
aaattcaaatatgaatcggtggcaaaatccgatccctctggttccatggaaggaagcgaatcctccaacagctgaaccgtggggaatcatcaatctcctc |
82192 |
T |
|
| Q |
328 |
t |
328 |
Q |
| |
|
| |
|
|
| T |
82193 |
t |
82193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 451
Target Start/End: Original strand, 194825 - 194870
Alignment:
| Q |
406 |
acattgtgcagaaccttctaatgataacttcctgctaaaagtgaca |
451 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
194825 |
acattgtacagaacctgctaatgataacttcctgctaaaagtgaca |
194870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 125322 - 125370
Alignment:
| Q |
406 |
acattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata |
454 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
125322 |
acattgtacaaaacctactaatgataacttcctgctaaaagtgacaata |
125370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 603
Target Start/End: Original strand, 125448 - 125477
Alignment:
| Q |
574 |
atgattatacaacctatggactctcacaaa |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
125448 |
atgattatacaacctatggactctcacaaa |
125477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 677
Target Start/End: Original strand, 13601936 - 13602592
Alignment:
| Q |
18 |
gtttgtacttgtcaacattcaataataaaataattattcattgtcaatatttatctcatatcatacataggatttcaacaaggaattatggggatttcat |
117 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
13601936 |
gtttgtacttgtcgacatgcaataataaaatcattattcattttcaatatttatctcatatcatacttaggatttcaacaaggaatgatggggatttcat |
13602035 |
T |
|
| Q |
118 |
aagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13602036 |
aagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtg |
13602135 |
T |
|
| Q |
218 |
gtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13602136 |
gtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcat |
13602235 |
T |
|
| Q |
318 |
caatctcctctacgcaaaatttccttatcatatatcttcttcagaaaatcaataaattgactacttccatgttcttttgtactttctcacattgtgcaga |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13602236 |
caatctcctctatgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgactagttccatgttcttttgtactttttcacattgtgcaga |
13602335 |
T |
|
| Q |
418 |
accttctaatgataacttcctgctaaaagtgacaataagaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttca |
517 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13602336 |
acctgctaatgataacttcctgctaaaagcgacaataagaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttca |
13602435 |
T |
|
| Q |
518 |
tgccattaaacaatattgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatat |
617 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13602436 |
tgccattaaac---attgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatat |
13602532 |
T |
|
| Q |
618 |
aggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcgctctctgtg |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13602533 |
aggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcactctctgtg |
13602592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 51 - 301
Target Start/End: Complemental strand, 19153326 - 19153081
Alignment:
| Q |
51 |
ttattcattgtcaatatttatctcatatcatacataggatttcaacaaggaattatggggatttcataagatttcttgcaaaacaagttaataactgcct |
150 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||| || ||||||| ||||| |||||||||| | | |
|
|
| T |
19153326 |
ttattcattgccaatatttatctccta-----cataggatttcaacaaggaattgtggggatttcacaatatttctttcaaaagaagttaataagcgttt |
19153232 |
T |
|
| Q |
151 |
tatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggc |
250 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| | |||||||| |||||||||| ||||||||||||| || |||| | ||||| || ||| |||| |
|
|
| T |
19153231 |
tatattggattttaagtaaacttggcgcttatcaggtggttgccagaaattgattgaaagagcggtggcgacggttacaaaatttgaatgagttggtggt |
19153132 |
T |
|
| Q |
251 |
agaacccaatccctctagttccatggaaggaagcgaatcctctgacacctg |
301 |
Q |
| |
|
||| || ||| ||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
19153131 |
ggaatccgatctctcatgttccatggaaggaattgaatcctccgacacctg |
19153081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 23833668 - 23833625
Alignment:
| Q |
633 |
taggtgcccttgctcaacacaaccttcaagtattcgctctctgt |
676 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23833668 |
taggttcccttgctcaacacaaccttcaagtattcactctctgt |
23833625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 456
Target Start/End: Original strand, 13487572 - 13487606
Alignment:
| Q |
422 |
tctaatgataacttcctgctaaaagtgacaataag |
456 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
13487572 |
tctaatgataacttcctgttaaaagtgacaataag |
13487606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 676
Target Start/End: Complemental strand, 4800041 - 4800005
Alignment:
| Q |
640 |
ccttgctcaacacaaccttcaagtattcgctctctgt |
676 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4800041 |
ccttgctcaacacaaccttcaagtattcactctctgt |
4800005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 627 - 664
Target Start/End: Complemental strand, 4800084 - 4800047
Alignment:
| Q |
627 |
gctgactaggtgcccttgctcaacacaaccttcaagta |
664 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
4800084 |
gctgattaggttcccttgctcaacacaaccttcaagta |
4800047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 454
Target Start/End: Original strand, 21770132 - 21770196
Alignment:
| Q |
390 |
tcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata |
454 |
Q |
| |
|
|||||||||| || | ||||||| |||||||| ||||||||||||||||| ||| ||||| |||| |
|
|
| T |
21770132 |
tcttttgtacgtttttacattgtacagaacctgctaatgataacttcctggtaatagtgagaata |
21770196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 603
Target Start/End: Original strand, 21770274 - 21770303
Alignment:
| Q |
574 |
atgattatacaacctatggactctcacaaa |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21770274 |
atgattatacaacctatggactctcacaaa |
21770303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 574 - 613
Target Start/End: Complemental strand, 17845 - 17805
Alignment:
| Q |
574 |
atgattatacaacctatggactctc-acaaactatgagcac |
613 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
17845 |
atgattatacaacctatggactgtcaacaaactatgagcac |
17805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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