View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_30 (Length: 234)
Name: NF4230_low_30
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28913652 - 28913871
Alignment:
| Q |
1 |
acaaaaggatattctctcctccatcccttttcattggcccgatcaatacgatttcgtaacaattctatctcccttgagatccactgccatataacgcaga |
100 |
Q |
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| T |
28913652 |
acaaaaggatattctctcctccatcccttttcattggcccgatcaatacgatttcgtaacaattctatctcccttgagatccactgccatataacgcaga |
28913751 |
T |
|
| Q |
101 |
agagagacaaatatcagcaacaaaatatgatagatcagaggttcttttatactccaaagcaaacagaaatgttcaataatgttaataagcattagacaaa |
200 |
Q |
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| T |
28913752 |
aaagagacaaatatcagtaacaaaatatgatagatcagaggttcttttatactccaaagcaaacagaaatgttcaataatgttaataagcattagacaaa |
28913851 |
T |
|
| Q |
201 |
tgagctattggggataaagg |
220 |
Q |
| |
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||| |||||||||||||||| |
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| T |
28913852 |
tgaactattggggataaagg |
28913871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 28923076 - 28923290
Alignment:
| Q |
4 |
aaaggatattctctcctccatcccttttcattggcccgatcaatacgatttcgtaacaattctatctcccttgagatccactgccatataacgcagaaga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
28923076 |
aaaggatattctctcctccatcccttttcattggcccgatcaatacgatttcgtaacaattctatctcccttgagatccactgccatataaagcaga--a |
28923173 |
T |
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| Q |
104 |
gagacaaatatcagcaacaaaatatgatagatcagaggttcttttatactccaaagcaaacagaaatgttcaataatgttaataagcattagacaaatga |
203 |
Q |
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| T |
28923174 |
gagacaaatatcagtaacaaaatatgatagatcagaggttcttttatactccaaagcaaacagaaatgttctataatgttaataagcattagacaaatga |
28923273 |
T |
|
| Q |
204 |
gctattggggataaagg |
220 |
Q |
| |
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|| |||||||||||| |
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| T |
28923274 |
acttatggggataaagg |
28923290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 28889343 - 28889562
Alignment:
| Q |
2 |
caaaaggatattctctcctccatcccttttcattggcccgatcaatacgatttcgtaacaattctatctcccttgagatccactgccatataacgcagaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||| |
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| T |
28889343 |
caaaaggatattctctcctccatcccttttcattagcccgatcaatacgatttcgtaacaattctctctcccttgagatccactgccatgtaaagtagaa |
28889442 |
T |
|
| Q |
102 |
gagagacaaatatcagcaacaaaatatgatagatcagaggttcttttatactccaaagcaaacagaaatgttcaataatgttaataag-cattagacaaa |
200 |
Q |
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||||||||||||| || |||||||||||||||||| | |||||||||||||| |||| || |||||||| ||||| ||||||||||| ||||||||||| |
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| T |
28889443 |
gagagacaaatattagttacaaaatatgatagatcatatgttcttttatactctaaaggaatcagaaatggtcaatgatgttaataagccattagacaaa |
28889542 |
T |
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| Q |
201 |
tgagctattggggataaagg |
220 |
Q |
| |
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||| |||||||||||||||| |
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| T |
28889543 |
tgaactattggggataaagg |
28889562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 28931965 - 28932184
Alignment:
| Q |
4 |
aaaggatattctctcctccatcccttttcattggcccgatcaatacgatttcgtaacaattctatctcccttgagatccactgccatataacgcagaaga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||| |||||||| |
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| T |
28931965 |
aaaggatattctctcctccatcccttttcattggccagatcaatacgatttcttaacaacgcaatctcccttgagatccactgccatataaagcagaaga |
28932064 |
T |
|
| Q |
104 |
g--agacaaatatcagcaacaaaatatgatagatcagaggttcttttatactccaaagcaaacagaaatgttcaataatgttaataagc-attagacaaa |
200 |
Q |
| |
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| |||| |||||||| |||||||||||||||||||||||||||||||||| |||| || |||||||| ||||| |||||||||||| |||||||||| |
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| T |
28932065 |
gaaagaccaatatcagtaacaaaatatgatagatcagaggttcttttataccataaagaaagcagaaatgctcaatgatgttaataagctattagacaaa |
28932164 |
T |
|
| Q |
201 |
tgagctattggggataaagg |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
28932165 |
tgagctattggggataaagg |
28932184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 28899309 - 28899496
Alignment:
| Q |
4 |
aaaggatattctctcctccatcccttttcattggcccgatcaatacgatttcgtaacaattctatctcccttgagatccactgccatataacgcagaa-- |
101 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||| |||||||||||| | |||||||| | |||||||||||||||||||||||||||| | |||| |
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| T |
28899309 |
aaaggatattctcttctccgtcccttttcattggccagatcaatacgatgttgtaacaatgccatctcccttgagatccactgccatataaag-agaaag |
28899407 |
T |
|
| Q |
102 |
-gagagacaaatatcagcaacaaaatatgatagatcagaggttcttttatactccaaagcaaacagaaatgttcaataatgttaataag |
189 |
Q |
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|| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |
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| T |
28899408 |
ggaaagacaaatatcagtaacaaaatattatagatcagaggttcttttatactcttaaggaagcagaaatgttcaataatgttaataag |
28899496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 24383754 - 24383812
Alignment:
| Q |
3 |
aaaaggatattctctcctccatcccttttcattggcccgatcaatacgatttcgtaaca |
61 |
Q |
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||||||||||||||| | ||| ||||||||||| ||||| |||||| ||||| |||||| |
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| T |
24383754 |
aaaaggatattctcttcgccaacccttttcatttgcccggtcaataagattttgtaaca |
24383812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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