View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_4 (Length: 667)
Name: NF4230_low_4
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 124 - 647
Target Start/End: Complemental strand, 39983258 - 39982733
Alignment:
| Q |
124 |
ttggacatatcaattttttggaaattaatatgttccaacaatttggccacttaaaaaatccaaaatttaaaattattccggtagattcttctattccatt |
223 |
Q |
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| T |
39983258 |
ttggacatatcaatttttgggaaattaatatgttccaacaatttggccacttaaaaaatccaaaatataaaattattccggtagattcttctattccatt |
39983159 |
T |
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| Q |
224 |
ctaggttataatgccggtagcaaagttgagtggttttctttttggagctagataataagtgattttcttctcaccccatgctttcaaaatttcaaaacta |
323 |
Q |
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| T |
39983158 |
ctaggttataatgccggtagcaaagttgagtagttttctttttggagctagataataagtgattttcttctcaccccatgctttcaaaatttcaaaacta |
39983059 |
T |
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| Q |
324 |
ctcatgcttggattttgtaatctaaataaacggtatttgtttggattgtagtatctagacatatggaatttcttcattttgaaatcatattaaagtaggc |
423 |
Q |
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| T |
39983058 |
ctcatgcttggattttgtaatctaaataaacggtatttgtttggattgtagtatctagacgtatggaatttcttccttttgaaatcatattaaaataggc |
39982959 |
T |
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| Q |
424 |
attcagataacatgattcatatatatcaaataacatcatgattcatactagcaag-nnnnnnnnnntcaaatttaaatacaaatattagacatataaatt |
522 |
Q |
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| T |
39982958 |
attcagataacatgattc----atatcaaataacatcatgattcatactagcaagaaaaaaaaaaatcaaatttaaatacaaatattagac--ataaatt |
39982865 |
T |
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| Q |
523 |
taacactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgctttcttcattagac-------tcaccatgtacaccatgannnn |
615 |
Q |
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| T |
39982864 |
taacactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgctttcttcattagactcaccagtcaccatgtacaccatgatttt |
39982765 |
T |
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| Q |
616 |
nnnacaaatttcttagaactagagtgtctagt |
647 |
Q |
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| T |
39982764 |
tttacaaatttcttagaactagagtgtctagt |
39982733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 525 - 611
Target Start/End: Original strand, 40416147 - 40416234
Alignment:
| Q |
525 |
acactaaaggttcatgaatgagccaagctagtaaaactcttgcaagatgacatgctttcttcattagactc-accatgtacaccatga |
611 |
Q |
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| T |
40416147 |
acactaaaagttcatgaatgagctaagctggtaaaactcttgcaagatgacatgcttttttcattagactcaaccatgtacaccatga |
40416234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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