View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_7 (Length: 520)
Name: NF4230_low_7
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 273 - 496
Target Start/End: Original strand, 24859976 - 24860199
Alignment:
| Q |
273 |
catctcctgtttaaaaaatcttatctcctcatttacacttatccagctattggttctttcacagtcacacggatcacgatccgtgccatcactcaactaa |
372 |
Q |
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| T |
24859976 |
catctcctgtttaaaaaatcttatctccccatttacacttatccagctattggttctttcacagtcacacggatcacgatccgtgccatcactcaactaa |
24860075 |
T |
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| Q |
373 |
ccaccacaaccgttgattagcttcttatcaacggccacactcactccacaatcaatcaaatctcaacaaaaccaaaattttcaaaacacatttcaaatcc |
472 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24860076 |
ccactacaaccgttgattagcttcttatcaacggccacattcactccacaatcaatcaaatctcaacaaaaccaaaaatttcaaaacacatttcaaatcc |
24860175 |
T |
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| Q |
473 |
cgcgcttcactcttcttacacccc |
496 |
Q |
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||||| |||||||||||||||||| |
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| T |
24860176 |
cgcgcctcactcttcttacacccc |
24860199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 24859857 - 24859978
Alignment:
| Q |
72 |
tcgttcactttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactatttacaattattcatagactttgattcatg |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
24859857 |
tcgttcactttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactgattacaattattcatggactttgattcatg |
24859956 |
T |
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| Q |
172 |
atccttattataatttttacat |
193 |
Q |
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|||||||||||||||||||||| |
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| T |
24859957 |
atccttattataatttttacat |
24859978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 23632004 - 23632053
Alignment:
| Q |
155 |
atagactttgattcatgatccttattataatttttacatataacactata |
204 |
Q |
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| T |
23632004 |
atagactttgattcatgatccttattatcatttttacatataacgctata |
23632053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 9396669 - 9396624
Alignment:
| Q |
159 |
actttgattcatgatccttattataatttttacatataacactata |
204 |
Q |
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|||||||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
9396669 |
actttgattcataatccttgttatcatttttacatataacactata |
9396624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 27316290 - 27316193
Alignment:
| Q |
79 |
ctttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactatttacaattattcatagactttgattcatgatcct |
176 |
Q |
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||||||||| ||| |||||||||||||||||| | ||||| ||||||| ||||||||||| | || ||| ||||||||||||||||||||||||| |
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| T |
27316290 |
ctttgcaaaattagtttaatttcgcatcaaattcatctttcaatttactcaatcattttaccgtctataatccttcatagactttgattcatgatcct |
27316193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 9924376 - 9924343
Alignment:
| Q |
163 |
tgattcatgatccttattataatttttacatata |
196 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
9924376 |
tgattcatgatcctcattataatttttacatata |
9924343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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