View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4230_low_8 (Length: 509)
Name: NF4230_low_8
Description: NF4230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4230_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 46328173 - 46327693
Alignment:
| Q |
19 |
agagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46328173 |
agagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttttccgagttgtgaggatatttttc |
46328074 |
T |
|
| Q |
119 |
atcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgataaagatatnnnnnnnctattatgatatagagatttataat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46328073 |
atcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgataaagatataaaaaaactattatgatatagagatttataat |
46327974 |
T |
|
| Q |
219 |
tacaacaattatgattcaaaatatgaggaatgatagggtccaattcgagtatcgttgcattccaaattttagagagggaagatacagctaaaagaaagga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46327973 |
tacaacaattatgattcaaaatatgaggaatgatagggtccaattcgagtatcgttgcattccaaattttagagagggaagatacagctaaaagaaagga |
46327874 |
T |
|
| Q |
319 |
aaatagactaacttcttaatttatacccattatgatatcatatgacgagtatataattaaaaccagtgcagacttgcaataaaacaactagaccctaata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46327873 |
aaatagactaacttcttaatttatacccattatgatatcatatgacgagtatataattaaaaccagtgcagacttgcaataaaacaactagaccctaata |
46327774 |
T |
|
| Q |
419 |
cattcagtattactctctaaagagaatgcacagtattcattctatattaagttgattgagtcatgcttgcttgtagaatta |
499 |
Q |
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| T |
46327773 |
cattcagcattactctctaaagagaatgcacagtattcattctatattaagttgatcgagtcatgcttgcttgtagaatta |
46327693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 46323691 - 46323534
Alignment:
| Q |
23 |
ggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatca |
122 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||| |
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| T |
46323691 |
ggcaatttgtcaggggtgtccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttttcatca |
46323592 |
T |
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| Q |
123 |
catatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgataa |
180 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46323591 |
catatgcagtgccaacttcagccatctgagcttccattttgcccggttcctgtgataa |
46323534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 46530684 - 46530844
Alignment:
| Q |
19 |
agagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttc |
118 |
Q |
| |
|
|||||| ||| | ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |
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| T |
46530684 |
agagggtaaggtgtcaggagtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttc |
46530783 |
T |
|
| Q |
119 |
atcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgata |
179 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||| |
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|
| T |
46530784 |
atcacatatgcagtgccaacttcagccatctcagcttccattttgcctggttcctgtgata |
46530844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 46523256 - 46523416
Alignment:
| Q |
19 |
agagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttc |
118 |
Q |
| |
|
|||||| ||| | ||||| ||||| | |||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||||| |
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| T |
46523256 |
agagggtaaggtgtcaggagtatctgagttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttttc |
46523355 |
T |
|
| Q |
119 |
atcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgata |
179 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||| |
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|
| T |
46523356 |
atcacatatgcagtgccaacttcagccatctcagcttccattttgcctggttcctgtgata |
46523416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 46519715 - 46519878
Alignment:
| Q |
22 |
gggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatc |
121 |
Q |
| |
|
||||||| | || ||||||||||| ||||| || |||||| ||||||| ||||||| ||||||||||||||| | ||||||||||||| |||||||| | |
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| T |
46519715 |
gggcaaggtttctggggtatccggattgaatcctgttccaaactctcctttgggaagtattggaggaccagttttgcgagttgtgaggacatttttcagc |
46519814 |
T |
|
| Q |
122 |
acatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgataaagata |
185 |
Q |
| |
|
||||||| ||||||||| ||||| |||| |||||| |||| ||| ||||||||| ||| ||||| |
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|
| T |
46519815 |
acatatgcagtgccaacctcagctatctcagcttctattttgccaggttcctgtaatatagata |
46519878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 46464483 - 46464605
Alignment:
| Q |
39 |
tatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtagtgccaac |
138 |
Q |
| |
|
||||||||||||| |||||||| ||||| || ||||||| |||||||||||| || ||| ||||||||||||||||||| |||||| | |||||||| |
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| T |
46464483 |
tatccgggttgaatccagttccgtactcgccgttgggaagcattggaggaccaatttcccgtgttgtgaggatatttttcagcacataagcggtgccaac |
46464582 |
T |
|
| Q |
139 |
ttcagccatctgagcttccattt |
161 |
Q |
| |
|
|||| |||||| ||||||||||| |
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|
| T |
46464583 |
ttcaaccatcttagcttccattt |
46464605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 88714 - 88663
Alignment:
| Q |
39 |
tatccgggttgaacccagttccatactctcccttgggaaaaattggaggacc |
90 |
Q |
| |
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||||||| ||||| ||||||||||||||||| || || |||||||||||||| |
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|
| T |
88714 |
tatccggattgaatccagttccatactctccttttgggaaaattggaggacc |
88663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 359
Target Start/End: Complemental strand, 7476364 - 7476284
Alignment:
| Q |
281 |
caaattttagagagggaagataca--gctaaaagaaaggaaaatagactaacttcttaatttatacccattatgatatcat |
359 |
Q |
| |
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|||| |||||||||| | |||||| |||||||||| |||||||||| ||||||||| ||| || |||||||||| |||| |
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| T |
7476364 |
caaaatttagagaggaatgatacatagctaaaagaacggaaaatagattaacttcttcattcatgtccattatgatgtcat |
7476284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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