View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4231_high_1 (Length: 320)
Name: NF4231_high_1
Description: NF4231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4231_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 13984574 - 13984268
Alignment:
| Q |
1 |
tctcggccattaatttcatatcagaagactcgaattacacaattaacgatctcgaccaataagctggattcgacggtcgagatctgtaactgcatagcag |
100 |
Q |
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| T |
13984574 |
tctcggccattaattttatatcagaagactcgaattacacaattaacgatctcgaccaataagttggattcgacggtcgagatctgtaactgcatagcag |
13984475 |
T |
|
| Q |
101 |
ggaatccatttccggtaaccacacatcatctcaccttatctacaatgaagaaatcagttatggccttgtcaaattcttgtgctggcagttcctttaaaga |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
13984474 |
ggaatccatttccgggaaccacacatcatctcaccttatctacaatgaagaaatcagttatggccttgtcaacttcttgtgttggcagttcctttaaaga |
13984375 |
T |
|
| Q |
201 |
aatggccaccgctgcagcgatttcagaagacctgaattccaagaagtcaatacctgcaatgcaattgaattgtacaacaactctttaaatttattactcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13984374 |
aatggccaccgctgcagcgatttcagaagacctgaattccaagaagtcaatacctgcaatgcaattgaattgtacaacaactctttaaattcattactcc |
13984275 |
T |
|
| Q |
301 |
ttaagaa |
307 |
Q |
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||||||| |
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| T |
13984274 |
ttaagaa |
13984268 |
T |
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