View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4231_high_6 (Length: 238)
Name: NF4231_high_6
Description: NF4231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4231_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 10340267 - 10340061
Alignment:
| Q |
15 |
actcataactaggtggatgctgaattaattgggaattcaatattgcaatttcatattccatactattttaaatgagataccgaaacctgttttgaaagga |
114 |
Q |
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| T |
10340267 |
actcataactaggtggatgctgaattaattggaaattcaatattgcaatttcatattccatactattttaaatgagatagcgaaacctgttttgaaagga |
10340168 |
T |
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| Q |
115 |
tcatacgattatattgtgttttcttttttaaatcatttttagcaaaatgtaagaatgatactgttatagttttaggaatttgggaatgtgttgcatgatt |
214 |
Q |
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| T |
10340167 |
tcatacgattatattgtgttttcttttttaaatcatttttagcaaaatgtaagaatgatactgttatagttttaggaatttggaaatgtgttgcatgatt |
10340068 |
T |
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| Q |
215 |
ttgaaac |
221 |
Q |
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||||||| |
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| T |
10340067 |
ttgaaac |
10340061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 10370711 - 10370519
Alignment:
| Q |
19 |
ataactaggtggatgctgaattaattgggaattcaatattgcaatttcatattccatactattttaaatgagataccgaaacctgttttgaaaggatcat |
118 |
Q |
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| T |
10370711 |
ataactaggcggatgctgaattaatcgggaattcaatattggaatttcatattccataccatttcaaatgagacagggaaacctgttttgaaatgatcat |
10370612 |
T |
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| Q |
119 |
acgattatattg------tgttttcttttttaaatcatttttagcaaaatgtaagaatgatactgttatagttttaggaatttgggaatgtgt |
205 |
Q |
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| T |
10370611 |
acaattatattgcgtgtttctttttttttttaaatcatttttagccaaacctaagaatgatactgttctagttttaggaatttgtaaatgtgt |
10370519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 10346462 - 10346310
Alignment:
| Q |
64 |
ttcatattccatactattttaaatgagataccgaaacctgttttgaaaggatcatacgattatattgtgttttcttttttaaatcatttttagcaaaatg |
163 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||| |||| ||| || ||| |||| ||| |||||||| | ||||| |
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| T |
10346462 |
ttcatattgcatactattttaaatgagatagtgaaaccttattt-aaaggatcatacaattaaattttgcttt--ttttaaaagcatttttacccaaatg |
10346366 |
T |
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| Q |
164 |
taagaatgatactgttatagttttaggaatttgggaatgtgt--tgcatgattttg |
217 |
Q |
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| T |
10346365 |
taagaatgatactgttatagttttatgaatttggaaatgtgtgctgcatgattttg |
10346310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 10350940 - 10350845
Alignment:
| Q |
127 |
attgtgttttctttttta--aatcatttttagcaaaatgtaagaatgatactgtt-atagttttaggaatttgggaa--tgtgttgcatgattttg |
217 |
Q |
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| T |
10350940 |
attgtgtttttttttttataaatcatttctagccaactgtaagaatgatactgttaatagttttaagaatttagaaatgtgtgttgcatgattttg |
10350845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 26573753 - 26573559
Alignment:
| Q |
19 |
ataactaggtggatgctgaattaattgggaattcaatattgcaatttcatattccatactattttaaatgagataccgaaacctgttttgaaaggatcat |
118 |
Q |
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|||||||||||||||||||| |||| ||||||| ||||||| |||||| ||||||||||| |||||||||||||||| |||||||||| |||| | |
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| T |
26573753 |
ataactaggtggatgctgaactaatcgggaatttaatattggaatttcgtattccatactgttttaaatgagatacc------tgttttgaaatgatcgt |
26573660 |
T |
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| Q |
119 |
acgattatattgtgttttcttttttaaatcatttttagcaaaatgtaagaatgatactgttatagttttaggaatttgggaa--tgtgttgcatgatttt |
216 |
Q |
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| T |
26573659 |
acaattatagtgtttttttattttaaaatcatttttagccatatgtaagtatgatactgttatagttttaggaatttggaaatgtgtgttgcatgatttt |
26573560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 45219124 - 45218994
Alignment:
| Q |
53 |
aatattgcaatttcatattccatactattttaaatgagataccgaaacc---tgttttgaaaggatcatacgattatattgtgttttctttttt--aaat |
147 |
Q |
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||||||| || || ||||||||||| |||||||||||||| |||||| ||||||||||||||||||| | ||||| ||||||||||| || | |
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| T |
45219124 |
aatattggaagttgatattccataccattttaaatgagatggtgaaacccattgttttgaaaggatcatacaagtatat----ttttcttttttgaaatt |
45219029 |
T |
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| Q |
148 |
catttttagcaaaatgtaagaatgatactgttata |
182 |
Q |
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| T |
45219028 |
cttttttagcctaatgtaagaatgatattgttata |
45218994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 45241187 - 45241057
Alignment:
| Q |
53 |
aatattgcaatttcatattccatactattttaaatgagataccgaaacc---tgttttgaaaggatcatacgattatattgtgttttctttttt--aaat |
147 |
Q |
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||||||| ||||| |||||||||| |||||||||||||| |||||| ||||||||||||||||||| | ||||| |||||| |||| || | |
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| T |
45241187 |
aatattggaatttgatattccatagcattttaaatgagatggtgaaacctattgttttgaaaggatcatacaagtatat----ttttctattttgaaatt |
45241092 |
T |
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| Q |
148 |
catttttagcaaaatgtaagaatgatactgttata |
182 |
Q |
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| T |
45241091 |
cttttttagcttaatgtaagaatgatattgttata |
45241057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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