View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_high_1 (Length: 606)
Name: NF4232_high_1
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 2 - 446
Target Start/End: Complemental strand, 34136524 - 34136079
Alignment:
| Q |
2 |
ggagcacagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagctt |
101 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34136524 |
ggagcatagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagctt |
34136425 |
T |
|
| Q |
102 |
acaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34136424 |
acaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatc |
34136325 |
T |
|
| Q |
202 |
ttcaaatttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctca--tacacaaccaaagattgatcagtgtttctgaaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34136324 |
ttcaaatttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctcatttacacaaccaaagattgatcagtgtttctgaaat |
34136225 |
T |
|
| Q |
300 |
gagtgagtggctgcaatcaaatttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaataaaagaaaatttagttattaccgtt |
399 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34136224 |
gagtgagtggctgcaatcaaatttgctagtattgaaattactagtgtgcattatgtaagaattttatctcagaataaaagaaaatttagttattaccgtt |
34136125 |
T |
|
| Q |
400 |
cattatgtttgatcttcaaatattgaattgatataggctttcgaatt |
446 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||| |||| |
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| T |
34136124 |
cattatgtttgatc-tcaaatattgaattgatataggccttcaaatt |
34136079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 2 - 431
Target Start/End: Complemental strand, 34139476 - 34139049
Alignment:
| Q |
2 |
ggagcacagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagctt |
101 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| || ||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
34139476 |
ggagcacagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagctt |
34139377 |
T |
|
| Q |
102 |
acaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatc |
201 |
Q |
| |
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| || |||||||| || ||||||||||||| |||||||||||||| |||| |||||| ||| | ||||||| |||||||||||||| |||||||||| |
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| T |
34139376 |
attaacgagcaaaacccttcaaaatataagccttataaatggggtaaattttatgtccatagaacaaacagtaacttcaagaaacaagaagaggagaatc |
34139277 |
T |
|
| Q |
202 |
ttcaaatttatcat--tataagctacagtagagaaagatagtttaataaatgtatcacttagctca--tacacaaccaaagattgatcagtgtttctgaa |
297 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||| || ||||||||||||||||| |||||||| || |
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| T |
34139276 |
ttcaaatttatcattatataagctaccttagagaaagatattttaataaatgtatgacttagctcatgtaaacaaccaaagattgatcggtgtttctaaa |
34139177 |
T |
|
| Q |
298 |
atgagtgagtggctgcaatcaaatttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaataaaagaaaatttagttattaccg |
397 |
Q |
| |
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||||| | ||||| ||||||||||| ||||| ||||||| | |||||||||||| | | |||||||| ||||||||| ||| ||||| ||||| |
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| T |
34139176 |
atgagcaactggctacaatcaaattt----gtattagaattact-gggtgcattatgtatgcaatttatctcataataaaagacaataaagttaataccg |
34139082 |
T |
|
| Q |
398 |
ttcattatgtttgatcttcaaatattgaattgat |
431 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||| |
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|
| T |
34139081 |
ttcattatgtttgatc-tcaaaaattgatttgat |
34139049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 456 - 590
Target Start/End: Complemental strand, 34136097 - 34135963
Alignment:
| Q |
456 |
tgatataggccttcaaatttcgtttttaacgtttctggttgctaatatattttggtttgttgagattcttgttgattataaagtatttcaacattttcaa |
555 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34136097 |
tgatataggccttcaaatttagtttttaacgtttctggttgctaatatattttggtttggtgagattcttgttgattataaagtatttcaacattttcaa |
34135998 |
T |
|
| Q |
556 |
cctgtcagcaaagctaaaccacggtcacatacttg |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
34135997 |
cctgtcagcaaagctaaaccacggtcacatacttg |
34135963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 34142156 - 34141933
Alignment:
| Q |
2 |
ggagcacagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagctt |
101 |
Q |
| |
|
||||||||||| || |||| || ||||| || |||||||||||||| ||||| || |||||| |||| |||||| |||| ||||| || |||||| |
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|
| T |
34142156 |
ggagcacagagcgattgtgagcacagagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagctt |
34142057 |
T |
|
| Q |
102 |
acaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatc |
201 |
Q |
| |
|
| |||| |||||||| || ||||||||| ||||||||||||||| |||||| |||| |||||| | |||| ||| ||||||||||||||| |||||||| |
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| T |
34142056 |
ataaatgagcaaaacccttcaaaatataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatc |
34141957 |
T |
|
| Q |
202 |
ttcaaatttatcattataagctac |
225 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
34141956 |
ttcaaatttatcattataagctac |
34141933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 511 - 556
Target Start/End: Complemental strand, 34139004 - 34138959
Alignment:
| Q |
511 |
tttgttgagattcttgttgattataaagtatttcaacattttcaac |
556 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
34139004 |
tttggtgagattcttgttgtttataaagtatttcaacatttacaac |
34138959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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