View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4232_high_15 (Length: 226)
Name: NF4232_high_15
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 7298069 - 7298265
Alignment:
| Q |
14 |
gagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298069 |
gagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgc |
7298168 |
T |
|
| Q |
114 |
aattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcatctcttattggctttgtcaaagaaactgcatttccctacaacaac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7298169 |
aattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcatctcttattggctttgtcaaagaaactgcatttccctacaacaac |
7298265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 7293606 - 7293784
Alignment:
| Q |
25 |
ttcaattgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||| ||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
7293606 |
ttcaattgttggcaaagcttctccacaaccatgatgatttctgacaccacagacaaagtgttttgtccacaagaacaacccagatctgcaattgcaaggc |
7293705 |
T |
|
| Q |
125 |
ttttgaaaagtgttttggagtagaggcttgttatggcttcatctcttattggctttgtcaaagaaactgcatttcccta |
203 |
Q |
| |
|
|| || |||||| ||||||||||||| ||||||||||| |||||||| | ||||| ||||||| | | |||||||| |
|
|
| T |
7293706 |
ttctgggaagtgtgctggagtagaggctagttatggcttcctctcttatatgttttgttaaagaaattccctttcccta |
7293784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 32627933 - 32628066
Alignment:
| Q |
37 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtg |
136 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | | ||| ||||||||||||| ||||||||| |||||||| |||||||||| | ||||||| | |||| |
|
|
| T |
32627933 |
caaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtg |
32628032 |
T |
|
| Q |
137 |
ttttggagtagaggcttgttatggcttcatctct |
170 |
Q |
| |
|
| ||| ||| | ||| ||||||||||||||||| |
|
|
| T |
32628033 |
tgttgttgtacatgctggttatggcttcatctct |
32628066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 32709871 - 32709953
Alignment:
| Q |
37 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc |
119 |
Q |
| |
|
|||||||| ||||| ||| |||||| ||||||||||| |||||||||||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
32709871 |
caaagcttttccacgaccttgataaattctgataccaccaacaaagtgtttggcccagaagagcaacccaagtctgcaattgc |
32709953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 32704161 - 32704243
Alignment:
| Q |
37 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc |
119 |
Q |
| |
|
|||| ||| ||||||||| ||||| ||||||| | | | |||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
32704161 |
caaatcttttccacaaccttgatagtatctgagatcgccaacaaagtgtttggtccataagagcaacccaaatctgcaattgc |
32704243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 20115878 - 20115800
Alignment:
| Q |
37 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaa |
115 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||| | ||| ||||| ||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
20115878 |
caaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaa |
20115800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 8029021 - 8028898
Alignment:
| Q |
67 |
gataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcat |
166 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||| ||||||||||| | || ||||| | |||||| |||||||| | |||||||||||| |
|
|
| T |
8029021 |
gatatcaccaacaaagtgtttggcccagaagaacaacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctttatggcttcat |
8028922 |
T |
|
| Q |
167 |
ctcttattggctttgtcaaagaaa |
190 |
Q |
| |
|
|||| ||| ||||||||||||| |
|
|
| T |
8028921 |
ctctcatttcttttgtcaaagaaa |
8028898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 5811578 - 5811660
Alignment:
| Q |
37 |
caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc |
119 |
Q |
| |
|
|||||||| || |||||| ||||||| || || | ||| || ||||||||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
5811578 |
caaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgtttggtccaaaagagcaacccaagtctgcaattgc |
5811660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University