View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_high_5 (Length: 324)
Name: NF4232_high_5
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 144 - 306
Target Start/End: Original strand, 17981154 - 17981316
Alignment:
| Q |
144 |
ggtgacttgtcatcagacatcgatgagtgaggttgaattgtgttggcattttctgattcagttaacagtcataactcatttcaaaattttatatgataca |
243 |
Q |
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| T |
17981154 |
ggtgacttgtcattagacattgatgagtggggttgaattgtgttggctttttctgattcagttaacagtcataactcatttcaaaattttatatgattca |
17981253 |
T |
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| Q |
244 |
gttctttgcaattgcattacgtatgtgctttatggtcccaaacatgcctcacaggaagaactt |
306 |
Q |
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| T |
17981254 |
gttctttgcaattgcattacgtatgtgctttatggtcccaaacatgcctcacaggaagaactt |
17981316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 144 - 306
Target Start/End: Original strand, 17974498 - 17974662
Alignment:
| Q |
144 |
ggtgacttgtcatcagacatcgatgagtgaggttgaattgtgttggcattttctgattcagttaacagtcataactcatttcaaaattttatatgataca |
243 |
Q |
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| T |
17974498 |
ggtgacttgtcattagacatcgatgagtggggttgaattgtgttggctttttctgattcagttaacagtcataactcatttcaaaattgtatatcattca |
17974597 |
T |
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| Q |
244 |
gttctttgcaattgcattacgtatgtgctttatggt--cccaaacatgcctcacaggaagaactt |
306 |
Q |
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| T |
17974598 |
gttctttgcaaatgcattacgtatgtgctttatggtcccccaaacatgcctcacaggaagaactt |
17974662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 17974368 - 17974415
Alignment:
| Q |
13 |
aatatgttaagaataatctaaggtgaactgtcatcagacatcgatgag |
60 |
Q |
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| T |
17974368 |
aatatgttaagaataacctaaggtgaatcgtcatcagacatcaatgag |
17974415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 17981024 - 17981071
Alignment:
| Q |
13 |
aatatgttaagaataatctaaggtgaactgtcatcagacatcgatgag |
60 |
Q |
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| T |
17981024 |
aatatgttaagaataacctaaggtgaaccgtcatcaggcgtcgatgag |
17981071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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