View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_high_8 (Length: 285)
Name: NF4232_high_8
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 4105835 - 4106069
Alignment:
| Q |
37 |
aataatgagttgaatttattatttattttgagaccaataacacaatcatataaaatataaattgatattgatcctaatagtcaagctagccattgtgttg |
136 |
Q |
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| T |
4105835 |
aataatgagttgaatttattatttattttgagaccaataacacaatcatataaattataaattgatattgatcctaatagtcaagctagccattgtgttg |
4105934 |
T |
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| Q |
137 |
tgggcacaagcgcactacaggtagagctaagcctaaacctaagctccatccttgagtgggtgtgaaatgcctcttgcacaagtatttaacgatgaaataa |
236 |
Q |
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| T |
4105935 |
tgggcacaagtgcagtacaggtagagctaagcctaaacctaagctccatccttgagtgggtgtgaaatgtctcttgcacaagtatataacaatgaaataa |
4106034 |
T |
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| Q |
237 |
aagtaagaaataaaaataagagaaatgatttttgt |
271 |
Q |
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| T |
4106035 |
aagtaagaaataaaaataagagaaatgatatttgt |
4106069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4105675 - 4105726
Alignment:
| Q |
1 |
attacgccgactgcattcttcatgaatatggtaaataataatgagttgaatt |
52 |
Q |
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| T |
4105675 |
attacgccggctgtattcttcatgaatatggtaaatactaatgggttgaatt |
4105726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 4105640 - 4105674
Alignment:
| Q |
48 |
gaatttattatttattttgagaccaataacacaat |
82 |
Q |
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| T |
4105640 |
gaatttattatttattttgagaccaataacacaat |
4105674 |
T |
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