View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_low_1 (Length: 651)
Name: NF4232_low_1
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 17 - 636
Target Start/End: Original strand, 40453425 - 40454044
Alignment:
| Q |
17 |
cacagatccaaaaagaactccagcaagagatctcactgtcactgctcctagttcaccttctcctttacccatcaaccctaaacatgtccatgaaaaggcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453425 |
cacagatccaaaaagaactccagcaagagatctcactgtcactgctcctagttcaccttctcctttacccatcaaccctaaacatgtccatgaaaaggcc |
40453524 |
T |
|
| Q |
117 |
aagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaacagaaaaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453525 |
aagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaacagaaaaag |
40453624 |
T |
|
| Q |
217 |
tgactgaacatattgcaaacaattactcttcaaaaccggttgatagtattttaagaaggagttgggttaagccagcttctgatttaatcactcctcctac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453625 |
tgactgaacatattgcaaacaattactcttcaaaaccggttgatagtattttaagaaggagttgggttaagccagcttctgatttaatcactcctcctac |
40453724 |
T |
|
| Q |
317 |
ttcatcaagatatttgcttggtgacacagtttctttggatggtgtattagattatgaacctgttttgggtttaactaaggttgatgataacaaaaagaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453725 |
ttcatcaagatatttgcttggtgacacagtttctttggatggtgtattagattatgaacctgttttgggtttaactaaggttgatgataacaaaaagaat |
40453824 |
T |
|
| Q |
417 |
gctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaagactagttctacaaaccaggttagtatctctt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40453825 |
gctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaagtctagttctacaaaccaggttagtatctctt |
40453924 |
T |
|
| Q |
517 |
ttctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtgtttcttttgaatgaattgtgttg |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453925 |
ttctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtgtttcttttgaatgaattgtgttg |
40454024 |
T |
|
| Q |
617 |
caggttgtggtgttgagggt |
636 |
Q |
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|||||||||||||||||||| |
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| T |
40454025 |
caggttgtggtgttgagggt |
40454044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 386 - 508
Target Start/End: Original strand, 28229060 - 28229182
Alignment:
| Q |
386 |
tttaactaaggttgatgataacaaaaagaatgctcaagtgcttcatgaagatgaagataaacattcatctaaacagtattcaagctcctctgttccaaag |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||| ||||||||||| |
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| T |
28229060 |
tttaactaaggttgatgataacaaaaagaatgctcaagtgcttcgtgaagatgaagataaacatttatctaaaccttgttcaagctcatctgttccaaaa |
28229159 |
T |
|
| Q |
486 |
actagttctacaaaccaggttag |
508 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28229160 |
tctagttctacaaaccaggttag |
28229182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 518 - 595
Target Start/End: Original strand, 28229217 - 28229294
Alignment:
| Q |
518 |
tctctctgtgtgtaaattatttcacatgtgtataagcaagtttttcattgtatagtatagacaatggacttgagtgtt |
595 |
Q |
| |
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||||||| | ||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
28229217 |
tctctctctctgtgaattatttcacatgtgtataagcaactttttcattgtatagtctagacaatggacttgagtgtt |
28229294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 598 - 636
Target Start/End: Original strand, 28229317 - 28229355
Alignment:
| Q |
598 |
ttttgaatgaattgtgttgcaggttgtggtgttgagggt |
636 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
28229317 |
ttttgaatgaattttgttgcaggttgtggtgttgagggt |
28229355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 404
Target Start/End: Original strand, 31252370 - 31252532
Alignment:
| Q |
241 |
actcttcaaaaccggttgatagtattttaagaaggagttgggttaagc-cagcttctgatttaatcactcctcctacttcatcaagatatttgcttggtg |
339 |
Q |
| |
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||||||||||||| |||||||||| ||||| |||||||||| || || ||||||| || |||||||| |||| || | ||||||||||||||||| |
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| T |
31252370 |
actcttcaaaaccaattgatagtatcttaag---gagttgggtttaggtcaccttctgacttcatcactccacctaagtcgttaagatatttgcttggtg |
31252466 |
T |
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| Q |
340 |
acacagtttctttggatggtgta-ttagattatgaacctgttttgggtttaactaaggttgatgat |
404 |
Q |
| |
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||| | ||||| |||||||| | ||||| |||| | ||||||||||||||||||| |||||||| |
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| T |
31252467 |
acataaattcttcggatggtgaatttagacaatgaccttgttttgggtttaactaagattgatgat |
31252532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 31286398 - 31286474
Alignment:
| Q |
298 |
atttaatcactcctcctacttcatcaagatatttgcttggtgacacagtttctttggatggtgta-ttagattatga |
373 |
Q |
| |
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||||||||||| ||| | | ||||||| |||||||||||||||| || |||||||||||||| || ||||||||||| |
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| T |
31286398 |
atttaatcacttctcttgcatcatcaaaatatttgcttggtgacgcaatttctttggatggtatacttagattatga |
31286474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 31252246 - 31252282
Alignment:
| Q |
17 |
cacagatccaaaaagaactccagcaagagatctcact |
53 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
31252246 |
cacagatccaaaaagaactccctcaagagatctcact |
31252282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 20008263 - 20008124
Alignment:
| Q |
109 |
aaaaggccaagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaac |
208 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| | |||||||||| ||||| ||||| ||| ||| | || || || |||||||| ||||||| | |
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| T |
20008263 |
aaaaggccaagaaaatcactatttcattgctaaataataagaaaaataaaaaagcaaccaaggctacccgtgtccataaaaagaaaag---tactacatc |
20008167 |
T |
|
| Q |
209 |
agaaaaagtgactgaacatattgcaaacaattactcttcaaaa |
251 |
Q |
| |
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||||||| | ||| |||| |||||||||||||||||||||||| |
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| T |
20008166 |
agaaaaacttactaaacaaattgcaaacaattactcttcaaaa |
20008124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 24973555 - 24973587
Alignment:
| Q |
219 |
actgaacatattgcaaacaattactcttcaaaa |
251 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
24973555 |
actgaacaaattgcaaacaattactcttcaaaa |
24973587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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