View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_low_12 (Length: 284)
Name: NF4232_low_12
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 26373801 - 26374072
Alignment:
| Q |
13 |
cagaggataggagaaatcccaaaccatctgaaacagagttaaagagagcagatttccttttcaaatgtacttttgatgttgataggtgtgtaatcgatga |
112 |
Q |
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| T |
26373801 |
cagaggataggagaaatcccaaaccatctgaaacagagttaaagagagcagatttccttttcaaatgtacttttgatgttgataggtgtgtaatcgatga |
26373900 |
T |
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| Q |
113 |
taagtttcctgataagattgatggagctgaaggtaagttatccatctcttgtatatctttgtcttctatcttcattgattaaattggacacaccacatat |
212 |
Q |
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| T |
26373901 |
taagtttcctgataagattgatggagctgaaggtaagttatccatctcttgtatatctttgtcttctatcttcattgattaaattggacacaccacatat |
26374000 |
T |
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| Q |
213 |
agtaactatttgaactgttcatactgtacatttgcttgattttttaaaatatggaagtatgtcgttgctatt |
284 |
Q |
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| T |
26374001 |
agtaactatttgaactgttcatactgtacatttgcttgattttttaaaatatggaagtatgtcgttgctatt |
26374072 |
T |
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Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 40767755 - 40767550
Alignment:
| Q |
28 |
atcccaaaccatctgaaacagagttaaagagagcagatttccttttcaaatgtacttttgatgttgataggtgtgtaatcgatgataagtttcctgataa |
127 |
Q |
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| T |
40767755 |
atcccaaaccatctgaaatagagttaaagagagcagatttctttttcaaacgtactttcgatgttgatacgcttgtagtcgatgataaatttccggataa |
40767656 |
T |
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| Q |
128 |
gattgatggagctgaaggtaagttatccatctcttgtatatctttgtcttctatcttcattgattaaattggacacaccacatatagtaactatttgaac |
227 |
Q |
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| T |
40767655 |
gattgatggagttgaaggtcagttattcat-gcttgtatttctttgtctgctattttca-tgattaatttggacacaccacatacagtaactattttacc |
40767558 |
T |
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| Q |
228 |
tgttcata |
235 |
Q |
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|||||||| |
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| T |
40767557 |
tgttcata |
40767550 |
T |
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