View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_low_18 (Length: 244)
Name: NF4232_low_18
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 3350243 - 3350482
Alignment:
| Q |
5 |
taatactcacgtggcattaattaaagaaaaactatttattttgtattggaaaaacgttatttatattttatacttttaaagtttgattgtataagtttaa |
104 |
Q |
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| T |
3350243 |
taatactcacgtggcattaattaaagaaaaactatttattttgtattggaaaaacgttatttatattttatacttttaaagtttgattgtataagtttaa |
3350342 |
T |
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| Q |
105 |
tcttatttgctcnnnnnnngtttaatattatatttttattatatttgttttcttaactagtattttaaaggtctacgtttgcactattttgaaaaaatat |
204 |
Q |
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| T |
3350343 |
tattatttgctcaaaaaaagtttaatattatacttttattatatttgttttcttaactagtattttaaaggtctacgtttgcactattttgaaaaaatat |
3350442 |
T |
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| Q |
205 |
ttannnnnnncactaacgatggtaaaggtctacgtttgca |
244 |
Q |
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| T |
3350443 |
ttatttttttcactaacgatggtaaaggtctacgtttgca |
3350482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 3350465 - 3350494
Alignment:
| Q |
170 |
taaaggtctacgtttgcactattttgaaaa |
199 |
Q |
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| T |
3350465 |
taaaggtctacgtttgcactattttgaaaa |
3350494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 8206526 - 8206561
Alignment:
| Q |
134 |
atatttttattatatttgttttcttaactagtattt |
169 |
Q |
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| T |
8206526 |
atatttttattatatttgtttgcttaactagtattt |
8206561 |
T |
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