View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_low_20 (Length: 238)
Name: NF4232_low_20
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 26374342 - 26374121
Alignment:
| Q |
17 |
atctttagtgagacattctcagaagttctcaattcatctctatcttcaactttacaacgcaagatatcagaaggagcagtcttagtcttaacctcatctt |
116 |
Q |
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| T |
26374342 |
atctttagcgagacattttcagaagttctcaattcatctttatcttcaactttacaacgcaagatatcagaaggagcagtcttagtcttaacctcatctt |
26374243 |
T |
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| Q |
117 |
taatattctcataagttttcatctttatctttgtcttttttatctgctgaggcattttatttgtctcaagatgtagattattgtcggtctttttagcccc |
216 |
Q |
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| T |
26374242 |
taatattctcataagttttcatctttatctttgtcttttttatctgctgaggcattttatttgtctcaagatgtagattattgccggtctttttagcccc |
26374143 |
T |
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| Q |
217 |
cttcttattaaagaaccgctcc |
238 |
Q |
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| T |
26374142 |
cttcttattaaagaacagctcc |
26374121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 26374483 - 26374397
Alignment:
| Q |
26 |
gagacattctcagaagttctcaattcatctctatc------ttcaactttacaacgcaagatatcagaaggagcagtcttagtctta |
106 |
Q |
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| T |
26374483 |
gagacattctcagaagttctcaattcatctttatctttattttcaccattccaacgcatgatatcagaaggagcagtcttactctta |
26374397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 40767258 - 40767391
Alignment:
| Q |
17 |
atctttagtgagacattctcagaagttctcaattcatctctatcttcaactttacaacgcaagatatcagaaggagcagtcttagtcttaacctc----- |
111 |
Q |
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| T |
40767258 |
atctttggttagacattctcagaagttatcaattcatctttatcttcaactttccaacgcaagatgtcagacggagcagttttagtcttaacctcgtttt |
40767357 |
T |
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| Q |
112 |
-atctttaatattctcataagttttcatctttat |
144 |
Q |
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| T |
40767358 |
tatctttaatattctcataagttctcatctttat |
40767391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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