View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_low_22 (Length: 237)
Name: NF4232_low_22
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3350673 - 3350894
Alignment:
| Q |
1 |
attcaataagatgacgtaagtttcttctcacttaattaatgttttgtgttcgaattcagtctaaggaatgcagcaatattaaaacttttagagagagttt |
100 |
Q |
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| T |
3350673 |
attcaataagatgacgtaagtttcttctcacttaattaatgttttgtattcgaattcagtttaaggaatgcagcaatattaaaacttttagagagagttt |
3350772 |
T |
|
| Q |
101 |
gccacccatttcttttctacaaagttcgagggattattctctgcaattatgcaggagaatactgatttacacaaaaaataacaataattcaacttgatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3350773 |
gccacccatttcttttctacaaagttcgagggattattctctgcaattatgcaggagaatactgatttacacaaaaaataacaataattcaacttgatcc |
3350872 |
T |
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| Q |
201 |
ttgaaattacataatattagat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3350873 |
ttgaaattacataatattagat |
3350894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 3331968 - 3332024
Alignment:
| Q |
166 |
tttacacaaaaaataacaataattcaacttgatccttgaaattacataatattagat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3331968 |
tttacacaaaaaataacaataattcaacttgatccttgaaattacaaaatattagat |
3332024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 31733823 - 31733742
Alignment:
| Q |
20 |
gtttcttctcacttaattaatgttttgtgttcgaattcagtctaaggaatgcagcaatattaaaacttttagagagagtttg |
101 |
Q |
| |
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||||||||| |||||| ||||||||| |||||||||||| | ||| |||||||| |||||||| |||| ||||||||| |
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| T |
31733823 |
gtttcttctaacttaaccaatgttttgggttcgaattcagcattaggcatgcagcagagttaaaactcttagggagagtttg |
31733742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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