View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4232_low_23 (Length: 226)

Name: NF4232_low_23
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4232_low_23
NF4232_low_23
[»] chr8 (5 HSPs)
chr8 (14-210)||(7298069-7298265)
chr8 (25-203)||(7293606-7293784)
chr8 (37-170)||(32627933-32628066)
chr8 (37-119)||(32709871-32709953)
chr8 (37-119)||(32704161-32704243)
[»] chr6 (1 HSPs)
chr6 (37-115)||(20115800-20115878)
[»] chr5 (1 HSPs)
chr5 (67-190)||(8028898-8029021)
[»] chr4 (1 HSPs)
chr4 (37-119)||(5811578-5811660)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 7298069 - 7298265
Alignment:
Q  14 gagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298069 gagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgc 7298168  T
Q  114 aattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcatctcttattggctttgtcaaagaaactgcatttccctacaacaac 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298169 aattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcatctcttattggctttgtcaaagaaactgcatttccctacaacaac 7298265  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 7293606 - 7293784
Alignment:
Q  25 ttcaattgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggc 124  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||| ||||| |||||||||| | |||||||||||||||||    
T  7293606 ttcaattgttggcaaagcttctccacaaccatgatgatttctgacaccacagacaaagtgttttgtccacaagaacaacccagatctgcaattgcaaggc 7293705  T
Q  125 ttttgaaaagtgttttggagtagaggcttgttatggcttcatctcttattggctttgtcaaagaaactgcatttcccta 203  Q
    || ||  ||||||  ||||||||||||| ||||||||||| ||||||||  | ||||| ||||||| | | ||||||||    
T  7293706 ttctgggaagtgtgctggagtagaggctagttatggcttcctctcttatatgttttgttaaagaaattccctttcccta 7293784  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 32627933 - 32628066
Alignment:
Q  37 caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtg 136  Q
    |||||||| ||||||||  ||||||||||| | | ||| ||||||||||||| ||||||||| |||||||| ||||||||||  | ||||||| | ||||    
T  32627933 caaagcttttccacaactttgataatatctaagatcaccaacaaagtgtttgatccagaagagcaacctaagtctgcaattgtcaagcttttggagagtg 32628032  T
Q  137 ttttggagtagaggcttgttatggcttcatctct 170  Q
    | |||  ||| | ||| |||||||||||||||||    
T  32628033 tgttgttgtacatgctggttatggcttcatctct 32628066  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 32709871 - 32709953
Alignment:
Q  37 caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc 119  Q
    |||||||| ||||| ||| ||||||  ||||||||||| |||||||||||||| |||||||| ||||| || |||||||||||    
T  32709871 caaagcttttccacgaccttgataaattctgataccaccaacaaagtgtttggcccagaagagcaacccaagtctgcaattgc 32709953  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 32704161 - 32704243
Alignment:
Q  37 caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc 119  Q
    |||| ||| ||||||||| ||||| ||||||| | | | |||||||||||||||||| |||| ||||| ||||||||||||||    
T  32704161 caaatcttttccacaaccttgatagtatctgagatcgccaacaaagtgtttggtccataagagcaacccaaatctgcaattgc 32704243  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 20115878 - 20115800
Alignment:
Q  37 caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaa 115  Q
    |||||||| ||||||||| ||||||| ||||| | ||| ||||| ||||||||||| ||||| |||||||| |||||||    
T  20115878 caaagcttttccacaaccttgataatttctgagatcaccaacaaggtgtttggtcctgaagagcaacctaagtctgcaa 20115800  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 8029021 - 8028898
Alignment:
Q  67 gataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcat 166  Q
    |||| ||| |||||||||||||| |||||||||||||| |||||||||||  | || |||||    |  |||||| |||||||| |  ||||||||||||    
T  8029021 gatatcaccaacaaagtgtttggcccagaagaacaacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctttatggcttcat 8028922  T
Q  167 ctcttattggctttgtcaaagaaa 190  Q
    |||| |||   |||||||||||||    
T  8028921 ctctcatttcttttgtcaaagaaa 8028898  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 5811578 - 5811660
Alignment:
Q  37 caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc 119  Q
    |||||||| || |||||| ||||||| || || | ||| || ||||||||||||||| |||| ||||| || |||||||||||    
T  5811578 caaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgtttggtccaaaagagcaacccaagtctgcaattgc 5811660  T

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