View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4232_low_24 (Length: 205)

Name: NF4232_low_24
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4232_low_24
NF4232_low_24
[»] chr4 (1 HSPs)
chr4 (1-184)||(2254237-2254421)
[»] chr1 (4 HSPs)
chr1 (98-131)||(8296303-8296336)
chr1 (98-131)||(18280396-18280429)
chr1 (98-131)||(32408013-32408046)
chr1 (101-133)||(3552451-3552483)
[»] chr3 (1 HSPs)
chr3 (98-137)||(41417272-41417311)
[»] chr7 (3 HSPs)
chr7 (98-132)||(25583994-25584028)
chr7 (98-132)||(37757423-37757457)
chr7 (98-132)||(37763171-37763205)
[»] chr5 (1 HSPs)
chr5 (98-132)||(18345824-18345858)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2254421 - 2254237
Alignment:
Q  1 tcaaattcagatgaaacttagggtggaaaattgaagattttcccgccatagatcaattagtgtgtatgtacaattgaagatttttaatatatatttgcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||| |||||| ||| ||     
T  2254421 tcaaattcagatgaaacttagggtggaaaattgaagattttcccaccatatatcagttagtgtgcatgtacaattgaagatttttcatatatgttt-cat 2254323  T
Q  101 tctaaagtgagttgctcactttagaggagccgaatc--tagacttatttaattttcaattatctacttattgaatcaattaagact 184  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||||    
T  2254322 tctaaagtgagttgctcactttagaggagccgaatctttagacttatttaaagttcaattatctacttattgaatcaattaagact 2254237  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 8296303 - 8296336
Alignment:
Q  98 cactctaaagtgagttgctcactttagaggagcc 131  Q
    ||||||||||||||||||||||||||||||||||    
T  8296303 cactctaaagtgagttgctcactttagaggagcc 8296336  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 18280429 - 18280396
Alignment:
Q  98 cactctaaagtgagttgctcactttagaggagcc 131  Q
    ||||||||||||||||||||||||||||||||||    
T  18280429 cactctaaagtgagttgctcactttagaggagcc 18280396  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 32408013 - 32408046
Alignment:
Q  98 cactctaaagtgagttgctcactttagaggagcc 131  Q
    ||||||||||||||||||||||||||||||||||    
T  32408013 cactctaaagtgagttgctcactttagaggagcc 32408046  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 3552451 - 3552483
Alignment:
Q  101 tctaaagtgagttgctcactttagaggagccga 133  Q
    ||||||||||||||||||||||||| |||||||    
T  3552451 tctaaagtgagttgctcactttagatgagccga 3552483  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 41417272 - 41417311
Alignment:
Q  98 cactctaaagtgagttgctcactttagaggagccgaatct 137  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  41417272 cactctaaagtgagttgctcacttcagaggagccggatct 41417311  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 25584028 - 25583994
Alignment:
Q  98 cactctaaagtgagttgctcactttagaggagccg 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  25584028 cactctaaagtgagttgctcactttagaagagccg 25583994  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 37757457 - 37757423
Alignment:
Q  98 cactctaaagtgagttgctcactttagaggagccg 132  Q
    ||||||||||||||||||||| |||||||||||||    
T  37757457 cactctaaagtgagttgctcattttagaggagccg 37757423  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 37763205 - 37763171
Alignment:
Q  98 cactctaaagtgagttgctcactttagaggagccg 132  Q
    ||||||||||||||||||||| |||||||||||||    
T  37763205 cactctaaagtgagttgctcattttagaggagccg 37763171  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 18345824 - 18345858
Alignment:
Q  98 cactctaaagtgagttgctcactttagaggagccg 132  Q
    ||||||||||||| |||||||||||||||||||||    
T  18345824 cactctaaagtgaattgctcactttagaggagccg 18345858  T

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