View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_low_3 (Length: 560)
Name: NF4232_low_3
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 41782118 - 41782062
Alignment:
| Q |
488 |
gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgataatt |
544 |
Q |
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| T |
41782118 |
gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgacaatt |
41782062 |
T |
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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 487 - 544
Target Start/End: Original strand, 40519525 - 40519582
Alignment:
| Q |
487 |
tgacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgataatt |
544 |
Q |
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| T |
40519525 |
tgacaccctattacatttatataccagatggtcacatcaacaatttaatgtgacaatt |
40519582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 18163561 - 18163613
Alignment:
| Q |
487 |
tgacaccctaatacatttatataccaaatggccatatcaacagtttaatgtga |
539 |
Q |
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| T |
18163561 |
tgacaccctaataaatttatataccagatggccacatcaacaatttaatgtga |
18163613 |
T |
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