View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4232_low_5 (Length: 442)
Name: NF4232_low_5
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 35746584 - 35746170
Alignment:
| Q |
17 |
agaaaatgcctatgagtttgttagattcaaagagaaaagttccttaaatatagaataaatataaagccataaatatataagctgtttgggtttaacataa |
116 |
Q |
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| T |
35746584 |
agaaaatgcccatgagtttgttagattcaaagagaaaagttccttaaatatagaataaatataaagccataaatatataagctgtttgggtttaacataa |
35746485 |
T |
|
| Q |
117 |
tctcttatttttagaaatgagccaacccttgtgcatgagttacctttcatgatgaagacacaaagcataaacactaaaccatatacccgaaaacaactca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35746484 |
tctcttatttttagaaatgagccaacccttgtgcatgagttacctttcatgatgaagacacaaagcataaacactaaaccatatacccgaaaacaactca |
35746385 |
T |
|
| Q |
217 |
aactgatcaaatagataggaagggggaaggtgcctttataatccttcctctttcatttttattccttggctctctcttttgagaaagttccattacaatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35746384 |
aactgatcaaatagataggaagggggaaggtgcctttataatccttcctctttcattttaattccttggctctctcttttgagaaagttccattacaatt |
35746285 |
T |
|
| Q |
317 |
ctcatcatatcattaatttggtttttgcatcaacgttaggactagccccctaaatgcatgcatattcatgcatgcatatgtctcaaatttttctattacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35746284 |
ctcatcatatcattaatttggtttttgcatcaacgttaggactagccccctaaatgcatgcatattcatgcatgcatatgtctcaaatttttctattacc |
35746185 |
T |
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| Q |
417 |
aacctaaaatttcat |
431 |
Q |
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||||||||||||||| |
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| T |
35746184 |
aacctaaaatttcat |
35746170 |
T |
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