View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4232_low_9 (Length: 298)
Name: NF4232_low_9
Description: NF4232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4232_low_9 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 20)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 8962506 - 8962775
Alignment:
| Q |
13 |
aatatcagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagta |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8962506 |
aatatcagactttggtttagccaagttgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagta |
8962605 |
T |
|
| Q |
113 |
ttttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8962606 |
ttttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacag |
8962705 |
T |
|
| Q |
213 |
tcacagataaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggagatat |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8962706 |
tcacagatgaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggagatat |
8962775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 8939579 - 8939845
Alignment:
| Q |
13 |
aatatcagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagta |
112 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| || ||||| ||||| || || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
8939579 |
aatatcagacttcggtttagctaagctgtgctccaaaaatcaaagtacagtatcaatgaccgcagccaggggaactttagggtacatggcacctgaagtt |
8939678 |
T |
|
| Q |
113 |
ttttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8939679 |
ttttctcgaaactttgggaatgtctcttataagtctgatatatacagctacggtatgttgctgctggagatggttggaggaagaaagaatactaagacag |
8939778 |
T |
|
| Q |
213 |
tcacagataaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggaga |
279 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
8939779 |
tcacaggtgaagaaaattttcaagtattgtatccagattggatccatggtttatttgaaggtggaga |
8939845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 8927153 - 8927422
Alignment:
| Q |
13 |
aatatcagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagta |
112 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| |||||||| | | ||||||||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
8927153 |
aatatcggacttcggtttagcgaagctgtgctctaaaaatcatagcactgtatcgatgactgcagccaggggaacattaggttacatggcacctgaagtt |
8927252 |
T |
|
| Q |
113 |
ttttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
8927253 |
ttttctcgaaactttgggaatgtctcttataagtctgatatatacagctacggtatgttgttgctagagatggttggaggaagaaagaatactaaaacaa |
8927352 |
T |
|
| Q |
213 |
tcacagat---aaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggaga |
279 |
Q |
| |
|
|| | | |||||||||| |||||| ||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
8927353 |
ctactggtggcgaagaaaatttccaagttctgtatccagattggatccatggtttacttgaaggtggaga |
8927422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 9257404 - 9257158
Alignment:
| Q |
23 |
tttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaa |
122 |
Q |
| |
|
|||||||| || ||| ||||||| |||||||||| || | |||| |||||||| || || ||||||||||||||||||||||| ||||| |||||| ||| |
|
|
| T |
9257404 |
tttggtttggctaagatgtgctcaaaaaatcaaagtactatatctatgactgcagcgagaggaacattaggatacatggcacccgaagttttttctagaa |
9257305 |
T |
|
| Q |
123 |
actttgggaatgtctc----ttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacagtcacag |
218 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||| |||||||| || ||||| |||| || || ||||||||||||||||| || || |||| |
|
|
| T |
9257304 |
actttggtaatgtctcttaattataagtctgatatatatagctatggtatattgctattggaaattgttggaggaagaaagaatacaaatccaaccacaa |
9257205 |
T |
|
| Q |
219 |
ataaagaaaattttcaagttttgtatccagattggatccacggtttg |
265 |
Q |
| |
|
|| ||||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
9257204 |
atgaagaaaactttcaagttctatatccagattggatccacggtttg |
9257158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 9466634 - 9466373
Alignment:
| Q |
18 |
cagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttc |
117 |
Q |
| |
|
||||||| ||||| || ||| ||||||| ||||||| || || || || ||||| || || | ||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
9466634 |
cagacttcggtttggctaagatgtgctcgaaaaatcgaagtacagtgtctatgaccgcagccaaaggaacgttaggctacatggcacccgaagttttttc |
9466535 |
T |
|
| Q |
118 |
tcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacagtcaca |
217 |
Q |
| |
|
| ||||||| ||||||||||| ||||| ||||||||||| || ||||| |||||| || |||||||||| | ||||||||||||||| || ||| |||| |
|
|
| T |
9466534 |
tagaaacttcgggaatgtctcatataagtctgatatatatagttatggtatgttgttgttggagatggttgcaggaagaaagaatacaaacacaaccaca |
9466435 |
T |
|
| Q |
218 |
gataaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggaga |
279 |
Q |
| |
|
| | |||||||||| |||||| | ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
9466434 |
ggtgaagaaaatttacaagttctatatccagattggatccacgatttgcttgaagggggaga |
9466373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 9364604 - 9364868
Alignment:
| Q |
18 |
cagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttc |
117 |
Q |
| |
|
|||| |||||||| |||||| | || || |||||||||| ||| ||||| |||||||| |||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
9364604 |
cagattttggtttggccaagatatgttcaaaaaatcaaagtatcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttc |
9364703 |
T |
|
| Q |
118 |
tcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacagtcaca |
217 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| || || ||||| || |||| ||||| ||||||||||||||||| || ||| | | |
|
|
| T |
9364704 |
aagaaactttggtaatgtctcttataagtctgatatatacagttacggtatgttattgttggaaatggttggaggaagaaagaatacaaaaacaattagt |
9364803 |
T |
|
| Q |
218 |
gataaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggagatat |
282 |
Q |
| |
|
| |||||||| | |||||| ||||||||| ||||||||| |||| ||||||| |||||||| |
|
|
| T |
9364804 |
ggcgaagaaaatatacaagttgagtatccagactggatccacaatttgcttgaaggaggagatat |
9364868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 9242440 - 9242254
Alignment:
| Q |
18 |
cagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttc |
117 |
Q |
| |
|
|||| |||||||| |||||| |||| || |||||||||| ||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
9242440 |
cagattttggtttggccaagatgtgttcgaaaaatcaaagtattgtatccatgactgcggctaagggaacagtaggctacatggcacctgaagttttttc |
9242341 |
T |
|
| Q |
118 |
tcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatac |
204 |
Q |
| |
|
| |||| ||||| |||||||||||||| || ||| ||||||| || || ||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
9242340 |
tagaaattttggaaatgtctcttataagtccgatgtatacagttacggtatgttattgttggagatggttggaggaagaaagaatac |
9242254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 9300301 - 9300562
Alignment:
| Q |
18 |
cagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttc |
117 |
Q |
| |
|
||||||| ||||| || ||| ||||||| |||||||||| || | |||| ||||| ||||| | ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
9300301 |
cagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggatacatggcacccgaagttttttc |
9300400 |
T |
|
| Q |
118 |
tcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacagtcaca |
217 |
Q |
| |
|
| ||||||||||||||||||||||||| || |||||||| || ||||| |||||| ||||||||||||| || ||||| |||||| | || ||| |||| |
|
|
| T |
9300401 |
tagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggggaaggaagaattcgaacacaaccaca |
9300500 |
T |
|
| Q |
218 |
gataaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggaga |
279 |
Q |
| |
|
| ||| || | |||||||| |||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
9300501 |
agtgaaggaagtccacaagttttatatccagattggatccacagtttagttgaaggaggaga |
9300562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 9337745 - 9338000
Alignment:
| Q |
18 |
cagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttc |
117 |
Q |
| |
|
|||| |||||||| |||||| | || || |||||||||| | | ||||| |||||||| |||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
9337745 |
cagattttggtttggccaagatatgttcaaaaaatcaaagtgtcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttc |
9337844 |
T |
|
| Q |
118 |
tcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacagtcaca |
217 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| || || ||||| || |||| ||||| ||||||||||||||||| || ||| | | |
|
|
| T |
9337845 |
aagaaactttggtaatgtctcttataagtctgatatatacagttacggtatgttattgttggaaatggttggaggaagaaagaatacaaaaacaattagt |
9337944 |
T |
|
| Q |
218 |
gataaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagg |
273 |
Q |
| |
|
| |||||||| | |||||| ||||||||| ||||||||| |||| ||||||| |
|
|
| T |
9337945 |
ggcgaagaaaatatacaagttgagtatccagactggatccacaatttgcttgaagg |
9338000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 9069761 - 9069627
Alignment:
| Q |
68 |
atgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaa |
167 |
Q |
| |
|
||||| || ||||||||||| || ||||| |||||||| |||||| | |||||||| ||||| ||||| ||| ||| |||||||||||||| ||||||| |
|
|
| T |
9069761 |
atgacagctgctaggggaaccttgggatatatggcacccgaagtagtgtctcgaaattttggaaatgtttctcttaagtctgatatatacagttatggaa |
9069662 |
T |
|
| Q |
168 |
tgttgctgctggagatggtcggaggaagaaagaat |
202 |
Q |
| |
|
||||| |||| || ||||| ||||||||||||||| |
|
|
| T |
9069661 |
tgttgttgctagaaatggttggaggaagaaagaat |
9069627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 9236258 - 9236119
Alignment:
| Q |
68 |
atgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaa |
167 |
Q |
| |
|
|||||||| || || ||||| || |||||||| ||||||||||| || || ||||||| || ||||| |||||||| |||||||| || ||||| || | |
|
|
| T |
9236258 |
atgactgcagcgagaggaaccttgggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgatatttatagctacggta |
9236159 |
T |
|
| Q |
168 |
tgttgctgctggagatggtcggaggaagaaagaatactaa |
207 |
Q |
| |
|
||||| |||| |||||||| || ||||||||||||||||| |
|
|
| T |
9236158 |
tgttgttgcttgagatggttggtggaagaaagaatactaa |
9236119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 9125237 - 9125095
Alignment:
| Q |
60 |
ttgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacag |
159 |
Q |
| |
|
||||||| |||||||||||||| ||||| || ||||| |||||||||||||| || || ||||| ||||| ||||| ||| ||| |||||||| || || |
|
|
| T |
9125237 |
ttgtatccatgactgcggctagaggaaccttgggatatatggcacctgaagttttgtcacgaaattttggaaatgtttctcgtaagtctgatatttatag |
9125138 |
T |
|
| Q |
160 |
ctatggaatgttgctgctggagatggtcggaggaagaaagaat |
202 |
Q |
| |
|
||||| |||||| ||||||| |||| |||||| | |||||| |
|
|
| T |
9125137 |
ttatgggatgttgttgctggaattggttggaggacgcaagaat |
9125095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 9377984 - 9378114
Alignment:
| Q |
77 |
gctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgc |
176 |
Q |
| |
|
||||| |||||||| || ||||| ||||||||||| || || ||||||| || ||||| ||||| || |||||||| || ||||| ||||| ||| ||| |
|
|
| T |
9377984 |
gctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgc |
9378083 |
T |
|
| Q |
177 |
tggagatggtcggaggaagaaagaatactaa |
207 |
Q |
| |
|
| |||||||| ||||| |||||||||||||| |
|
|
| T |
9378084 |
tagagatggttggaggtagaaagaatactaa |
9378114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 8979051 - 8978916
Alignment:
| Q |
68 |
atgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaa |
167 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||||||||||||| | || |||| ||||| ||||| ||| |||||||||||| || |||||||||| |
|
|
| T |
8979051 |
atgacagcggctaggggtaccttgggatatatggcacctgaagttctgtcaagaaattttggtaatgtgtctcttaaatctgatatttatagctatggaa |
8978952 |
T |
|
| Q |
168 |
tgttgctgctggagatggtcggaggaagaaagaata |
203 |
Q |
| |
|
||||| |||| || ||||| | |||||| ||||||| |
|
|
| T |
8978951 |
tgttgttgctagaaatggttgcaggaaggaagaata |
8978916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 9086057 - 9085923
Alignment:
| Q |
68 |
atgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaa |
167 |
Q |
| |
|
||||| || ||||||||||| || ||||| ||||| |||||||| || || ||||| ||||||||||| ||| ||| |||||||| || || ||||| | |
|
|
| T |
9086057 |
atgacagctgctaggggaaccttgggatatatggcgcctgaagttttgtcacgaaattttgggaatgtttctcttaagtctgatatttatagttatggga |
9085958 |
T |
|
| Q |
168 |
tgttgctgctggagatggtcggaggaagaaagaat |
202 |
Q |
| |
|
||||| |||| |||||||| || ||||| |||||| |
|
|
| T |
9085957 |
tgttgttgctagagatggttggtggaaggaagaat |
9085923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 9437598 - 9437484
Alignment:
| Q |
89 |
ttaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcg |
188 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| | |||||||| ||||| || |||||| |||| ||||| || ||||| ||||| ||||| || ||||| | |
|
|
| T |
9437598 |
ttaggttacattgcacctgaagtgttttcgaggaactttggaaatgtatcgtataaagctgacatatatagttatgggatgttactgcttgaaatggttg |
9437499 |
T |
|
| Q |
189 |
gaggaagaaagaata |
203 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
9437498 |
gaggaagaaaaaata |
9437484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 8861651 - 8861517
Alignment:
| Q |
68 |
atgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaa |
167 |
Q |
| |
|
||||| || |||| |||||| || ||||||||||| |||||||| | || |||| ||||||||||| ||| ||| || ||||| ||||| || |||| |
|
|
| T |
8861651 |
atgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtgtctcttaagtcagatatttacagttacggaa |
8861552 |
T |
|
| Q |
168 |
tgttgctgctggagatggtcggaggaagaaagaat |
202 |
Q |
| |
|
||||| |||| || ||||| ||||| ||||||||| |
|
|
| T |
8861551 |
tgttgttgctagaaatggttggagggagaaagaat |
8861517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 9420515 - 9420401
Alignment:
| Q |
89 |
ttaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcg |
188 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| | |||||||| ||||| || |||||| |||| ||||| || ||||| ||||| || || || ||||| | |
|
|
| T |
9420515 |
ttaggttacattgcacctgaagtgttttcgaggaactttggaaatgtatcgtataaagctgacatatatagttatgggatgttacttcttgaaatggttg |
9420416 |
T |
|
| Q |
189 |
gaggaagaaagaata |
203 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
9420415 |
gaggaagaaaaaata |
9420401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 9495535 - 9495669
Alignment:
| Q |
68 |
atgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaa |
167 |
Q |
| |
|
||||| ||||||||||| || | || ||||| ||||| ||||| || ||| | |||||||| ||||| || || || |||||| | || || | ||||| |
|
|
| T |
9495535 |
atgaccgcggctagggggactattggttacatagcaccagaagttttctctaggaactttggaaatgtgtcgtacaagtctgatgtttatagttttggaa |
9495634 |
T |
|
| Q |
168 |
tgttgctgctggagatggtcggaggaagaaagaat |
202 |
Q |
| |
|
||||| |||| ||||||||||| |||||| ||||| |
|
|
| T |
9495635 |
tgttgttgctagagatggtcgggggaagacagaat |
9495669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 52174459 - 52174523
Alignment:
| Q |
137 |
tcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaa |
201 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||| | || || ||| | |||||||||||||| |
|
|
| T |
52174459 |
tcttacaaatctgatatatacagttatggcatgttgattcttgaaatgattggaggaagaaagaa |
52174523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 9171710 - 9171971
Alignment:
| Q |
18 |
cagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttc |
117 |
Q |
| |
|
||||||| ||||| || ||| ||||||| |||||||||| || | |||| |||||||| || || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
9171710 |
cagacttcggtttggctaagttgtgctcaaaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttc |
9171809 |
T |
|
| Q |
118 |
tcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaagacagtcaca |
217 |
Q |
| |
|
| |||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |||| || || ||||||||||||||||| || ||| |||| |
|
|
| T |
9171810 |
tagaaattttgggaatgtctcttataagtctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaaccaca |
9171909 |
T |
|
| Q |
218 |
gataaagaaaattttcaagttttgtatccagattggatccacggtttgtttgaagggggaga |
279 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
9171910 |
aatgaagaaaattttcaagttctgtatccagattggatccacagtttgcttgaaggaggaga |
9171971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 1813 - 1999
Alignment:
| Q |
18 |
cagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttc |
117 |
Q |
| |
|
|||| |||||||| || ||| |||| || |||||||||| || |||||| |||||| | |||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
1813 |
cagattttggtttggctaagatgtgttcgaaaaatcaaagtaatgtatccatgactacagctaagggaacattaggctacatggcacctgaagttttttc |
1912 |
T |
|
| Q |
118 |
tcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatac |
204 |
Q |
| |
|
| |||| ||||| |||||||||||||| || ||||||||||| || || ||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
1913 |
tagaaattttggaaatgtctcttataagtccgatatatacagttacggtatgttattgttggagatggttggaggaagaaagaatac |
1999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 15910293 - 15910107
Alignment:
| Q |
18 |
cagactttggtttagccaagctgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttc |
117 |
Q |
| |
|
|||| |||||||| || ||| |||| || |||||||||| || |||||| ||||||| |||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
15910293 |
cagattttggtttggctaagatgtgttcgaaaaatcaaagtaatgtatccatgactgtagctaagggaacattaggctacatggcacctgaagttttttc |
15910194 |
T |
|
| Q |
118 |
tcgaaactttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatac |
204 |
Q |
| |
|
| |||| ||||| |||||||||||||| || ||||||||||| || || ||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
15910193 |
tagaaattttggaaatgtctcttataagtccgatatatacagttacggtatgttattgttggagatggttggaggaagaaagaatac |
15910107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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