View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4233_high_2 (Length: 407)

Name: NF4233_high_2
Description: NF4233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4233_high_2
NF4233_high_2
[»] scaffold0001 (3 HSPs)
scaffold0001 (47-291)||(186206-186450)
scaffold0001 (337-392)||(186487-186542)
scaffold0001 (18-47)||(186158-186187)
[»] scaffold0158 (6 HSPs)
scaffold0158 (47-291)||(36359-36603)
scaffold0158 (47-162)||(31020-31135)
scaffold0158 (158-291)||(28637-28769)
scaffold0158 (18-53)||(31148-31183)
scaffold0158 (337-392)||(36258-36313)
scaffold0158 (337-392)||(28536-28591)
[»] scaffold0035 (6 HSPs)
scaffold0035 (47-288)||(97520-97765)
scaffold0035 (197-288)||(87827-87920)
scaffold0035 (47-144)||(87950-88047)
scaffold0035 (344-392)||(87732-87780)
scaffold0035 (18-53)||(97778-97813)
scaffold0035 (344-392)||(97425-97473)
[»] chr1 (3 HSPs)
chr1 (47-267)||(18477697-18477921)
chr1 (48-267)||(18487793-18488016)
chr1 (18-53)||(18477934-18477969)
[»] chr4 (4 HSPs)
chr4 (47-173)||(14223520-14223646)
chr4 (47-173)||(14233615-14233741)
chr4 (18-46)||(14223472-14223500)
chr4 (18-46)||(14233567-14233595)
[»] chr2 (2 HSPs)
chr2 (47-173)||(28386076-28386202)
chr2 (18-46)||(28386028-28386056)
[»] scaffold0564 (2 HSPs)
scaffold0564 (47-173)||(535-661)
scaffold0564 (18-46)||(681-709)
[»] scaffold1407 (2 HSPs)
scaffold1407 (47-141)||(1408-1502)
scaffold1407 (18-46)||(1522-1550)
[»] scaffold0177 (1 HSPs)
scaffold0177 (47-141)||(32343-32437)


Alignment Details
Target: scaffold0001 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 47 - 291
Target Start/End: Original strand, 186206 - 186450
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  186206 ccgtcacgggttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 186305  T
Q  147 tgttaaagaagcttggcctataaataggtccagagaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  186306 tgttaaagaagcttggcctataaataggtccagagaggaagagctgaggagagaagcttttagacaagcattagaaattcatagccgattgtaatcctaa 186405  T
Q  247 gtttcagtttccttttcattcacagtttgatacaatcgtactgtt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  186406 gtttcagtttccttttcattcacagtttgatacaatcgtactgtt 186450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 186487 - 186542
Alignment:
Q  337 ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttat 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  186487 ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttat 186542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 186158 - 186187
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcagac 47  Q
    ||||||||||||||||||||||||||||||    
T  186158 cagaccgtcaccaccccgtgacgagcagac 186187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 47 - 291
Target Start/End: Complemental strand, 36603 - 36359
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||    
T  36603 ccgtcatgggttcgggagaatcagtctgccccacttccaggaacggtttccagttttctctcccactccctccacctgcagaggcacgatcataatacgt 36504  T
Q  147 tgttaaagaagcttggcctataaataggtccagagaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaa 246  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  36503 tgtaaaagaagcttggcctataaataggtccagagaggaagagctgcggagagaagtttttaggcaagcattagaaattcataactgattgtaatcctaa 36404  T
Q  247 gtttcagtttccttttcattcacagtttgatacaatcgtactgtt 291  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  36403 gtttcagtttccttttcattcacagtacgatacaatcgtactgtt 36359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 31135 - 31020
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  31135 ccgtcacgggttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctccacctgcagaggcacgatcagaacacat 31036  T
Q  147 tgttaaagaagcttgg 162  Q
    ||||||||||||||||    
T  31035 tgttaaagaagcttgg 31020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 158 - 291
Target Start/End: Complemental strand, 28769 - 28637
Alignment:
Q  158 cttggcctataaataggtccagagaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttcagtttc 257  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||| | |||||||||||||||||||||||||    
T  28769 cttggcctataaataggtccagagaggaagagctgcggagagaagtttttaggcaagctttagaaatgcataactgattgtaatcctaagtttcagtttc 28670  T
Q  258 cttttcattcacagtttgatacaatcgtactgtt 291  Q
    ||||||||| ||||||| ||||||||||||||||    
T  28669 cttttcatttacagttt-atacaatcgtactgtt 28637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 31183 - 31148
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcagaccgtcac 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  31183 cagaccgtcaccaccccgtgacgagcagaccgtcac 31148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 36313 - 36258
Alignment:
Q  337 ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttat 392  Q
    |||||||||||||| | |||||||||||| ||||||||||||||  ||||||||||    
T  36313 ccaaattcagtcattgttgttctaattccaaaataagctgctgccgtgttatttat 36258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 28591 - 28536
Alignment:
Q  337 ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttat 392  Q
    |||||||||||||| | |||||||||||| ||||||| ||||||  ||||||||||    
T  28591 ccaaattcagtcattgttgttctaattccaaaataagttgctgccgtgttatttat 28536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 136; Significance: 8e-71; HSPs: 6)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 47 - 288
Target Start/End: Complemental strand, 97765 - 97520
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||||    
T  97765 ccgtcacgggttcgggagaatcagtcttccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcacgaccagaacacgt 97666  T
Q  147 tgttaaagaagcttggcctataaataggtccagagaggaagagctga--ggagagaagtttttagacaagcattagaaattcatagccgattgtaatcct 244  Q
    | ||||  |||||||||||||||||||||| ||| | | | ||   |  || ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  97665 ttttaagaaagcttggcctataaataggtctagaaaaggaaaggaaaagggggagaagtttttaggcaagcattagaaattcatagctgattgtaatcct 97566  T
Q  245 aagtttca--gtttccttttcattcacagtttgatacaatcgtact 288  Q
    ||||||||   |||||||||||||||||||||||||||||||||||    
T  97565 aagtttcaagttttccttttcattcacagtttgatacaatcgtact 97520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 87920 - 87827
Alignment:
Q  197 gagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttca--gtttccttttcattcacagtttgatacaatcgtact 288  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  87920 gagaagtttttaggcaaacattagaaattcatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtact 87827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 88047 - 87950
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacac 144  Q
    |||||||| ||||||||||||||||||  |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||| |||||| ||||||||    
T  88047 ccgtcacgggttcgggagaatcagtcttgcccactcccaggaacggttttcagttttctctcccacttcctccacctgcagaagcacgaccagaacac 87950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 87780 - 87732
Alignment:
Q  344 cagtcatcgctgttctaattccgaaataagctgctgctatgttatttat 392  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  87780 cagtcatcgctgttctaattccgaattaagctgctgccgtgttatttat 87732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 97813 - 97778
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcagaccgtcac 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  97813 cagaccgtcaccaccccgtgacgagcagaccgtcac 97778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 97473 - 97425
Alignment:
Q  344 cagtcatcgctgttctaattccgaaataagctgctgctatgttatttat 392  Q
    ||||||||| ||||||||||||||| ||||||||||   ||||||||||    
T  97473 cagtcatcgttgttctaattccgaattaagctgctgtcgtgttatttat 97425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 47 - 267
Target Start/End: Complemental strand, 18477921 - 18477697
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||||    
T  18477921 ccgtcatgggttcgggagaatcagtctcccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcacgaccagaacacgt 18477822  T
Q  147 tgttaaagaagcttggcctataaataggtccagag-aggaagagctgaggagagaag--tttttagacaagcattagaaattcatagccgattgtaatcc 243  Q
    | || | |||||||||||||||||||||| ||||| || |||     ||||||||||  ||||||| |||||||||||||||||||||  ||||||||||    
T  18477821 tttttacgaagcttggcctataaataggtgcagagaagaaaggaaaaaggagagaagtttttttaggcaagcattagaaattcatagcttattgtaatcc 18477722  T
Q  244 taagtttc-agtttccttttcattc 267  Q
    |||||||| ||||||||||||||||    
T  18477721 taagtttcaagtttccttttcattc 18477697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 48 - 267
Target Start/End: Complemental strand, 18488016 - 18487793
Alignment:
Q  48 cgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgtt 147  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| ||| || |||||||| ||    
T  18488016 cgtcacgggttcggaagaatcagtctcccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcatgaccagaacacatt 18487917  T
Q  148 gttaaagaagcttggcctataaataggtccagag-aggaagagctgaggagagaag--tttttagacaagcattagaaattcatagccgattgtaatcct 244  Q
     || | |||||||||||||||||||||| ||||| || |||     ||||||||||  ||||||| |||||||||||||||||||||  |||||||||||    
T  18487916 ttttaggaagcttggcctataaataggtgcagagaagaaaggaaaaaggagagaagtttttttaggcaagcattagaaattcatagcatattgtaatcct 18487817  T
Q  245 aagtttc-agtttccttttcattc 267  Q
    ||||||| ||||||||||||||||    
T  18487816 aagtttcaagtttccttttcattc 18487793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 18477969 - 18477934
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcagaccgtcac 53  Q
    |||||||||||||||||||| |||||||||||||||    
T  18477969 cagaccgtcaccaccccgtgtcgagcagaccgtcac 18477934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 14223520 - 14223646
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||||| |||||| |||| |||||||||||| |  | | |||||||||||| |||||||||||||| || |||||||||| ||||||||||| |||||    
T  14223520 ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgt 14223619  T
Q  147 tgttaaagaagcttggcctataaatag 173  Q
    |   || ||||||||||||||||||||    
T  14223620 ttccaatgaagcttggcctataaatag 14223646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 14233615 - 14233741
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||||| |||||| |||| |||||||||||| |  | | |||||||||||| |||||||||||||| || |||||||||| ||||||||||| |||||    
T  14233615 ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgt 14233714  T
Q  147 tgttaaagaagcttggcctataaatag 173  Q
    |   || ||||||||||||||||||||    
T  14233715 ttccaatgaagcttggcctataaatag 14233741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 14223472 - 14223500
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcaga 46  Q
    |||||||||||||||||||||||||||||    
T  14223472 cagaccgtcaccaccccgtgacgagcaga 14223500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 14233567 - 14233595
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcaga 46  Q
    |||||||||||||||||||||||||||||    
T  14233567 cagaccgtcaccaccccgtgacgagcaga 14233595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 28386076 - 28386202
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||||| |||||| |||| |||||||||||| |  | | |||||||||||| |||||||||||||| || |||||||||| ||||||||||| |||||    
T  28386076 ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgt 28386175  T
Q  147 tgttaaagaagcttggcctataaatag 173  Q
    |   || ||||||||||||||||||||    
T  28386176 ttccaatgaagcttggcctataaatag 28386202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 28386028 - 28386056
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcaga 46  Q
    |||||||||||||||||||||||||||||    
T  28386028 cagaccgtcaccaccccgtgacgagcaga 28386056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 661 - 535
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt 146  Q
    |||||||| |||||| |||| |||||||||||| |  | | |||||||||||  |||||||||||||| || |||||||||| ||||||||||| |||||    
T  661 ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttccatatttctctcccactcgctccacctgcagaagcacgatcagagcacgt 562  T
Q  147 tgttaaagaagcttggcctataaatag 173  Q
    |   || ||||||||||||||||||||    
T  561 ttccaatgaagcttggcctataaatag 535  T

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Target: scaffold0564; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 709 - 681
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcaga 46  Q
    |||||||||||||||||||||||||||||    
T  709 cagaccgtcaccaccccgtgacgagcaga 681  T

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Target: scaffold1407 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 1502 - 1408
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaa 141  Q
    |||||||| |||||| |||| |||||||||||| |  | | ||||||| ||||||||||||||||||| || |||||||||| ||||||||||||    
T  1502 ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggttcccagttttctctcccactcgctccacctgcagaagcacgatcagaa 1408  T

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Target: scaffold1407; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 1550 - 1522
Alignment:
Q  18 cagaccgtcaccaccccgtgacgagcaga 46  Q
    |||||||||||||||||||||||||||||    
T  1550 cagaccgtcaccaccccgtgacgagcaga 1522  T

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Target: scaffold0177 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 32343 - 32437
Alignment:
Q  47 ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaa 141  Q
    |||||||| |||||| |||| |||||||||||| |  | | ||| |||||| |||||||||||||||| || |||||||||| ||||||||||||    
T  32343 ccgtcacgggttcggaagaagcagtctcccccattatctgaaactgtttccggttttctctcccactcgctccacctgcagaagcacgatcagaa 32437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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