View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4233_high_5 (Length: 283)

Name: NF4233_high_5
Description: NF4233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4233_high_5
NF4233_high_5
[»] chr4 (1 HSPs)
chr4 (1-283)||(46721314-46721605)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 46721314 - 46721605
Alignment:
Q  1 gaagcgtgaatgctaagtcaat----gatagagggatagccgt---aagtagtgtgtgcgtgatttttaagtaaactcagaaacctaataagataatcga 93  Q
    ||||||||||||||||||||||    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46721314 gaagcgtgaatgctaagtcaatcaatgatagagggatagccgttataagtagtgtgtgcgtgatttttaagtaaactcagaaacctaataagataatcga 46721413  T
Q  94 tcttaagtcgtgcatgcatgcgtg--ttattttaaagtcaaaaacaaaatgtgcgtgattctaaagtcagataaaggcttgcgttatttcaaagtccaca 191  Q
    | ||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46721414 tattaagtcgtgcatgcatgcatgcgttattttaaagtcaaaaacaaaatgtgcgtgattctaaagtcagataaaggcctgcgttatttcaaagtccaca 46721513  T
Q  192 cacagtaacctgtatatatatgagcactctccacaagacctcactcaccattcgatctcaaactattattcattcgttcaatttcatggtaa 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46721514 cacagtaacctgtatatatatgagcactctccacaagacctcactcaccattcgatctcaaactattattcattcgttcaatttcatggtaa 46721605  T

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