View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4233_high_9 (Length: 219)
Name: NF4233_high_9
Description: NF4233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4233_high_9 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 37140534 - 37140755
Alignment:
| Q |
1 |
ttttttgtgataaacctatatttattttgtttatttctcctaatnnnnnnnnnnnnnnnn---tactgtacaggaccaagttaaagcaaacggaagtgga |
97 |
Q |
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| T |
37140534 |
ttttttgtgataaacctatatttattttgtttatttctcctaataaaaaaaaatgaaaaaaaatactgtacaggaccaagtcaaagcaaacggaagtgga |
37140633 |
T |
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| Q |
98 |
ttgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcaggaattgagagctttgaaaacttctcaacca |
197 |
Q |
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| T |
37140634 |
ttgtgaatacttaaaaagatgttgtgagactctgacagaagaaaataaaagattacaaaaggaacttcaggaattgagagctttgaaaacttctcaacca |
37140733 |
T |
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| Q |
198 |
ttctacatgcaacttccagcta |
219 |
Q |
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|||||||||||||||||||||| |
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| T |
37140734 |
ttctacatgcaacttccagcta |
37140755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 23336623 - 23336773
Alignment:
| Q |
69 |
aggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcagg |
168 |
Q |
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| T |
23336623 |
aggacaaagttaaagcaaacagaagtggattgtgagtatttgaagagatgttgtgagacattaacagaagagaatagaagattacaaaaggaacttcaag |
23336722 |
T |
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| Q |
169 |
aattgagagctttgaaaacttctcaaccattctacatgcaacttccagcta |
219 |
Q |
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| T |
23336723 |
agcttagagctttgaaaactactcaaccattctacatgcaacttccagcta |
23336773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 25901716 - 25901576
Alignment:
| Q |
69 |
aggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcagg |
168 |
Q |
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||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||| || |||| ||||||||||| | |
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| T |
25901716 |
aggactaagttgaagcaaacagaagtggattgtgaatacttaaagagatgctgtgaaacactaacagaagaaaataggaggctacacaaggaacttcaag |
25901617 |
T |
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| Q |
169 |
aattgagagctttgaaaacttctcaaccattctacatgcaa |
209 |
Q |
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| T |
25901616 |
aattaagagctttaaaaacttcaaatccattcaacatgcaa |
25901576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 891119 - 891184
Alignment:
| Q |
68 |
caggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaac |
133 |
Q |
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| T |
891119 |
caggaccaagttgaagcaaactgaagtggattgtgagtacttgaagagatgctgtgagactctaac |
891184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 4059100 - 4059241
Alignment:
| Q |
68 |
caggaccaagttaaagcaaacggaagtggattgtgaatacttaaaaagatgttgtgagactctaacagaagaaaataaaagattacaaaaggaacttcag |
167 |
Q |
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|||||| ||||| |||||||| || || |||||||||| || |||||||||||||||| |||||| || ||||||| | | || ||||| ||| | || |
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| T |
4059100 |
caggactaagttgaagcaaacagaggtagattgtgaatttttgaaaagatgttgtgagaatctaacggatgaaaatagacggttgcaaaaagaagtgcaa |
4059199 |
T |
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| Q |
168 |
gaattgagagctttgaaaacttctcaaccattctacatgcaa |
209 |
Q |
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| T |
4059200 |
gagttaagagcattgaaactttccccacaattctacatgcaa |
4059241 |
T |
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