View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4233_low_1 (Length: 509)
Name: NF4233_low_1
Description: NF4233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4233_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 322 - 447
Target Start/End: Complemental strand, 30967962 - 30967840
Alignment:
| Q |
322 |
atactttgtttgttaggcaagaaactggaggaaaaataatacttattgtaagtttgtatgtagatgacttaatctacacttgaaatgatgaagtagtgtt |
421 |
Q |
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| T |
30967962 |
atactttgtttgttaggcaagaaactggaggaaaaata---cttaccgtaagtttgtatgtagatgacttaatctacacttgaaatgatgaagaagtgtt |
30967866 |
T |
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| Q |
422 |
tgaagagttcaaacattctatggaaa |
447 |
Q |
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| T |
30967865 |
tgaagagttcaaacattctatggaaa |
30967840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30968029 - 30967957
Alignment:
| Q |
1 |
tcaaaagtatggagttgattacaatgaagttttttgctcctgtagccagatgggacactattagaactatactt |
74 |
Q |
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| T |
30968029 |
tcaaaagtatggagttgattacaatgaagttttt-gctcctgtaaccagatgggacactaatagaactatactt |
30967957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 30967301 - 30967257
Alignment:
| Q |
446 |
aagcagagtttgtagctgcagcttcttgtgcttgtcaagcagttt |
490 |
Q |
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| T |
30967301 |
aagcagagtttgtagctgcagcttcttgtgcttgtcaagcagttt |
30967257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 24653908 - 24653862
Alignment:
| Q |
217 |
aaagaaagctttgtatggcctcaaacaagctccaagagcatggtaca |
263 |
Q |
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| T |
24653908 |
aaagaaagctctatatggtctcaagcaagctccaagagcatggtaca |
24653862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 1752663 - 1752623
Alignment:
| Q |
224 |
gctttgtatggcctcaaacaagctccaagagcatggtacag |
264 |
Q |
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| T |
1752663 |
gctttgtatggccttaaacaagcaccacgagcatggtacag |
1752623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 42303102 - 42303150
Alignment:
| Q |
215 |
ttaaagaaagctttgtatggcctcaaacaagctccaagagcatggtaca |
263 |
Q |
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| T |
42303102 |
ttaaagaaagcattgtatggcttgaagcaagcgccaagagcatggtaca |
42303150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 15527932 - 15527892
Alignment:
| Q |
215 |
ttaaagaaagctttgtatggcctcaaacaagctccaagagc |
255 |
Q |
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| T |
15527932 |
ttaaagaaagctttttatggtctcaaacaagctccaggagc |
15527892 |
T |
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