View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4233_low_4 (Length: 305)
Name: NF4233_low_4
Description: NF4233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4233_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 53 - 305
Target Start/End: Complemental strand, 30968260 - 30968026
Alignment:
| Q |
53 |
cagttttcagactctggctttttcagtaatagagaagatcctgctacttatgaggaagctgcaaagttcaattgttggaaagaggctatggatcaggaaa |
152 |
Q |
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| T |
30968260 |
cagttttcagactctggctttttcagtaatagagaagatcctgctacttatgaggaagctgcaaagttcaattgttggaaagaggctatggatcaggaaa |
30968161 |
T |
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| Q |
153 |
ttgaagccatagaaagaaatgatacatgggaactaactgatttaccaactggaagcaggaagattagtgtaaaatggatttataagac--aatacaatga |
250 |
Q |
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| T |
30968160 |
ttgaagccatagaaagaaatga--------------------taccaactggaagcaggaagattagtgtaaaatggatttataagacaaaatacaatga |
30968081 |
T |
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| Q |
251 |
aaatggtaaagttgaaaaacacaaagccagattagtagcaaaggggtactctcaa |
305 |
Q |
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| T |
30968080 |
aaatggtaaagttgaaaaacacaaagccagattagtagcaaaggggtactctcaa |
30968026 |
T |
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