View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4233_low_6 (Length: 250)
Name: NF4233_low_6
Description: NF4233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4233_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4134486 - 4134253
Alignment:
| Q |
1 |
agaaaaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnnttt |
100 |
Q |
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| T |
4134486 |
agaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattgga---tgtaccagaagttttcatttggaaagataaaaaaattt |
4134390 |
T |
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| Q |
101 |
attggagaactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgtttaggtgtcgacgatgatgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134389 |
attggagaactggtccatggaatggaagggtttttctcggaacgccaagattgtcaaccgaatatctatttggttggcgtttaggtgtcgacgatgatgg |
4134290 |
T |
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| Q |
201 |
aaccacttttataacttataatttcgccgacaaaact |
237 |
Q |
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| T |
4134289 |
aaccacttttataacttataatttcgccgacaaaact |
4134253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4145288 - 4145055
Alignment:
| Q |
1 |
agaaaaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnnttt |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
4145288 |
agaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattgga---tgtaccagaagttttcatttggaaagataaaaaaattt |
4145192 |
T |
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| Q |
101 |
attggagaactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgtttaggtgtcgacgatgatgg |
200 |
Q |
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| T |
4145191 |
attggagaactggtccatggaatggaagagtttttctcggaacgccaagattgtcaaccgaatatctatttggttggcgtttaggtgtcgacgatgatgg |
4145092 |
T |
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| Q |
201 |
aaccacttttataacttataatttcgccgacaaaact |
237 |
Q |
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| T |
4145091 |
aaccacttttataacttataatttcgccgacaaaact |
4145055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 4153291 - 4153113
Alignment:
| Q |
1 |
agaaaaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnnttt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||| | || |||| ||||||||||||| || ||||||||||||||||||||||||| || |
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| T |
4153291 |
agaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattgga---tgcaccagaagttttcatttggaaagataaaaatattc |
4153195 |
T |
|
| Q |
101 |
attggagaactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgttt |
182 |
Q |
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| T |
4153194 |
attggagaacaggtccatggaatggaagggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttt |
4153113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4123941 - 4123708
Alignment:
| Q |
1 |
agaaaaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnnttt |
100 |
Q |
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||||||||||| |||||||||||||||||||||| | || |||| |||||||||| ||||| ||||||||||||||||||| | ||| || |
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| T |
4123941 |
agaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagatt---ggatgcaccagaagttttcatttggtatgataagaaaattc |
4123845 |
T |
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| Q |
101 |
attggagaactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgtttaggtgtcgacgatgatgg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||| || || |||| |||| | ||| || ||||||| ||| | | ||| ||||||| |
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| T |
4123844 |
attggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgatgg |
4123745 |
T |
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| Q |
201 |
aaccacttttataacttataatttcgccgacaaaact |
237 |
Q |
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||| |||| ||| ||||| |||||||||||||||||| |
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| T |
4123744 |
aactacttatattacttacaatttcgccgacaaaact |
4123708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4163644 - 4163414
Alignment:
| Q |
1 |
agaaaaagtgacaatgatccttcttcaggacattttacaattagtgttgaaagattggaggatgtaccagaagttttcatttggaaagatnnnnnnnttt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||| || | ||| ||||||||||||| || |||||||||||| |||||| | ||| || |
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| T |
4163644 |
agaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattgga---tgcaccagaagtttttatttggtatgataagagaattc |
4163548 |
T |
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| Q |
101 |
attggagaactggtccatggaatggaagggtttttcttggaacgccaagaatgtcaaccgaatatctatttggttggcgtttaggtgtcgacgatgatgg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||| | || ||||||| |||||| ||| || ||||||||||| | | ||| | ||||| |
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| T |
4163547 |
attggagaactggtccatggaatggaacggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttttgatcaagacaaagatgg |
4163448 |
T |
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| Q |
201 |
aaccacttttataacttataatttcgccgacaaa |
234 |
Q |
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||| |||| | |||||||| ||||||||| |||| |
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| T |
4163447 |
aactacttatctaacttatgatttcgccgtcaaa |
4163414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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