View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4233_low_7 (Length: 240)
Name: NF4233_low_7
Description: NF4233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4233_low_7 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 31045260 - 31045049
Alignment:
| Q |
18 |
gtttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaaacttcgtttggtgag |
117 |
Q |
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| T |
31045260 |
gtttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaagcttcgtttggtgag |
31045161 |
T |
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| Q |
118 |
gctttaggagaagagcaacttttcctttacatacactgctgcataccttgcatgtgatgattcatgtcacactgtttatggtctttatctgagctctttg |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31045160 |
gctttaggagaatagcaacttttcctttacatacactgctgaataccttgcatgagatgattcatgtcagactgtttatggtctttatctgagctctttg |
31045061 |
T |
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| Q |
218 |
cttatagttcat |
229 |
Q |
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|||||||||||| |
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| T |
31045060 |
cttatagttcat |
31045049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 172113 - 172338
Alignment:
| Q |
18 |
gtttgcatgagtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgcc------gcaaacttcgttt |
111 |
Q |
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||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||||| |
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| T |
172113 |
gtttgcatgagattgaattttgaa-cttaatttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgttt |
172211 |
T |
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| Q |
112 |
ggtgaggctttaggagaagagcaac-ttttcctt-tacatacactgc---tgcatacc--ttgcatgtgatgattcatgtcacac--tgtttatggtctt |
202 |
Q |
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|||| ||||||| |||||||||||| |||||||| || | || | | | || ||| || |||||||||||||||||||||| ||||||||||||| |
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| T |
172212 |
ggtgtggctttaagagaagagcaacattttccttctagaaacgtttcctttacacacccgtttcatgtgatgattcatgtcacactttgtttatggtctt |
172311 |
T |
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| Q |
203 |
tatctgagctctttgcttatagttcat |
229 |
Q |
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|||||||||| |||||||||| ||||| |
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| T |
172312 |
tatctgagctatttgcttataattcat |
172338 |
T |
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