View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4233_low_8 (Length: 233)

Name: NF4233_low_8
Description: NF4233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4233_low_8
NF4233_low_8
[»] scaffold0035 (3 HSPs)
scaffold0035 (1-233)||(97487-97721)
scaffold0035 (1-154)||(87794-87949)
scaffold0035 (180-233)||(87950-88003)
[»] chr1 (2 HSPs)
chr1 (55-233)||(18477697-18477877)
chr1 (55-233)||(18487793-18487973)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-233)||(186250-186480)
[»] scaffold0158 (3 HSPs)
scaffold0158 (1-233)||(36329-36559)
scaffold0158 (1-125)||(28607-28729)
scaffold0158 (162-233)||(31020-31091)
[»] chr4 (2 HSPs)
chr4 (151-233)||(14223564-14223646)
chr4 (151-233)||(14233659-14233741)
[»] chr2 (1 HSPs)
chr2 (151-233)||(28386120-28386202)
[»] scaffold0564 (1 HSPs)
scaffold0564 (151-233)||(535-617)
[»] scaffold1407 (1 HSPs)
scaffold1407 (189-233)||(1414-1458)


Alignment Details
Target: scaffold0035 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 97487 - 97721
Alignment:
Q  1 gtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaa-cttgaaacttaggattacaatcagctatgaa 99  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  97487 gtaataatatatagataataattgaaataaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagctatgaa 97586  T
Q  100 tttctattgcttgcctaaaaacttctatgccttttcctttccttt-ctggacctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttct 198  Q
    |||||| |||||||||||||||||||   |||||||||||||||| || |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  97587 tttctaatgcttgcctaaaaacttctcccccttttcctttccttttctagacctatttataggccaagctttcttaaaaacgtgttctggtcgtgcttct 97686  T
Q  199 gtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    | |||||||||||||||||||||||||||||||||    
T  97687 gcaggtggaggaagtgggagagaaaactggaaacc 97721  T

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Target: scaffold0035; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 87794 - 87949
Alignment:
Q  1 gtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaa-cttgaaacttaggattacaatcagctatgaa 99  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  87794 gtaataatatatagataataattgaaataaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagctatgaa 87893  T
Q  100 tttctattgcttgcctaaaaacttctatgccttttcctttcc-tttctggacctat 154  Q
    |||||| || ||||||||||||||||   ||||||||||||| |||||||||||||    
T  87894 tttctaatgtttgcctaaaaacttctcccccttttcctttccttttctggacctat 87949  T

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Target: scaffold0035; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 87950 - 88003
Alignment:
Q  180 gtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||    
T  87950 gtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaactgaaaacc 88003  T

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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 18477697 - 18477877
Alignment:
Q  55 gaatgaaaaggaaacttgaaacttaggattacaatcagctatgaatttctattgcttgcctaaaaa--cttctatgccttttcctttcctttctggacct 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  ||||| | | |||||||||| | |||| ||||    
T  18477697 gaatgaaaaggaaacttgaaacttaggattacaataagctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacct 18477796  T
Q  153 attaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||| |||||||||||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  18477797 atttataggccaagcttcgtaaaaaacgtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaactggaaacc 18477877  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 18487793 - 18487973
Alignment:
Q  55 gaatgaaaaggaaacttgaaacttaggattacaatcagctatgaatttctattgcttgcctaaaaa--cttctatgccttttcctttcctttctggacct 152  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||  ||||| | | |||||||||| | |||| ||||    
T  18487793 gaatgaaaaggaaacttgaaacttaggattacaatatgctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacct 18487892  T
Q  153 attaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||| ||||||||||||| || ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  18487893 atttataggccaagcttcctaaaaaatgtgttctggtcatgcttctgcaggtggaggaagtgggagagaaaactggaaacc 18487973  T

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Target: scaffold0001 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 186480 - 186250
Alignment:
Q  1 gtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaacttgaaacttaggattacaatcagctatgaat 100  Q
    ||||||||||||||||||||||| ||||||||  | |||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||    
T  186480 gtaataatatatagataataattgaaataaaacagtacgattgtatcaaactgtgaatgaaaaggaaac-tgaaacttaggattacaatcggctatgaat 186382  T
Q  101 ttctattgcttgcctaaaaacttctatgccttttcctttcctttctggacctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgt 200  Q
    ||||| |||||| |||||| ||||| | |||   |  ||||| |||||||||||| |||||||||||||  |||| |||||||| || |||||| ||||     
T  186381 ttctaatgcttgtctaaaagcttctct-cctcagctcttcctctctggacctatttataggccaagcttctttaacaacgtgttctgatcgtgcctctgc 186283  T
Q  201 aggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||| ||| |||||||||||||||||||||||    
T  186282 aggtgcagggagtgggagagaaaactggaaacc 186250  T

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Target: scaffold0158 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 36329 - 36559
Alignment:
Q  1 gtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaacttgaaacttaggattacaatcagctatgaat 100  Q
    ||||| ||||||||||||||||| ||||||||  | |||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  36329 gtaatgatatatagataataattgaaataaaacagtacgattgtatcgtactgtgaatgaaaaggaaact-gaaacttaggattacaatcagttatgaat 36427  T
Q  101 ttctattgcttgcctaaaaacttctatgccttttcctttcctttctggacctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgt 200  Q
    ||||| ||||||||||||||||||| | ||    |  ||||| |||||||||||| |||||||||||||  || | ||||| || || |||||| ||||     
T  36428 ttctaatgcttgcctaaaaacttctct-ccgcagctcttcctctctggacctatttataggccaagcttcttttacaacgtattatgatcgtgcctctgc 36526  T
Q  201 aggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||||||| |||||||||||||||||||||||    
T  36527 aggtggagggagtgggagagaaaactggaaacc 36559  T

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Target: scaffold0158; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 28607 - 28729
Alignment:
Q  1 gtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaacttgaaacttaggattacaatcagctatgaat 100  Q
    ||||| ||||||||||||||||| ||||||||  | |||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||| |||| ||    
T  28607 gtaatgatatatagataataattgaaataaaacagtacgattgtat-aaactgtaaatgaaaaggaaact-gaaacttaggattacaatcagttatgcat 28704  T
Q  101 ttctattgcttgcctaaaaacttct 125  Q
    |||||  ||||||||||||||||||    
T  28705 ttctaaagcttgcctaaaaacttct 28729  T

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Target: scaffold0158; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 31020 - 31091
Alignment:
Q  162 ccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||||||  |||| || ||||| || |||||| |||| ||||||||| |||||||||||||||||||||||    
T  31020 ccaagcttctttaacaatgtgttctgatcgtgcctctgcaggtggagggagtgggagagaaaactggaaacc 31091  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 14223646 - 14223564
Alignment:
Q  151 ctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||| |||||||||||||  ||  ||||||| | || ||||||||||| ||||||||  ||||||||||||| |||||||||    
T  14223646 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaacc 14223564  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 14233741 - 14233659
Alignment:
Q  151 ctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||| |||||||||||||  ||  ||||||| | || ||||||||||| ||||||||  ||||||||||||| |||||||||    
T  14233741 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaacc 14233659  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 28386202 - 28386120
Alignment:
Q  151 ctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||| |||||||||||||  ||  ||||||| | || ||||||||||| ||||||||  ||||||||||||| |||||||||    
T  28386202 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaacc 28386120  T

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Target: scaffold0564 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 535 - 617
Alignment:
Q  151 ctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||| |||||||||||||  ||  ||||||| | || ||||||||||| ||||||||  |||||||||||||  ||||||||    
T  535 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatatggaaacc 617  T

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Target: scaffold1407 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 1414 - 1458
Alignment:
Q  189 tcgtgcttctgtaggtggaggaagtgggagagaaaactggaaacc 233  Q
    ||||||||||| ||||||||  |||||||||||||||||| ||||    
T  1414 tcgtgcttctgcaggtggagcgagtgggagagaaaactgggaacc 1458  T

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