View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4234_high_7 (Length: 247)
Name: NF4234_high_7
Description: NF4234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4234_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2984151 - 2984348
Alignment:
| Q |
1 |
caatatgcatcgctaactaa-gccggcaaaggacctttgtcctttccaaaaccgattctgttgaagggccactcagcagaactaatcgnnnnnnntaatg |
99 |
Q |
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| T |
2984151 |
caatatgcatagctaactaaagccggcaaaggacctttgtcctttccaaaaccgattctgttgaagggccaatcagcagaactaatcgaaaacaataatg |
2984250 |
T |
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| Q |
100 |
tattaagttgttctttgtcaatcctcttcaacattaacaacggatcatttaaactgtggaaggtcctaaacaatggtctttttaaaccggaaaaatgg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2984251 |
tattaagttgttctttgtcaatcctcttcaacattaacaaacgatcatttaaactgtggaagatcctaaacaatggtctttttaaaccggaaaaatgg |
2984348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 2984538 - 2984584
Alignment:
| Q |
186 |
ccggaaaaatggttaaattaatggaacagttttcaacgttgaaaact |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2984538 |
ccggaaaaatggttaaattaatggaacagttttcaacgttgaaaact |
2984584 |
T |
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