View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4234_low_3 (Length: 569)
Name: NF4234_low_3
Description: NF4234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4234_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 7756454 - 7757007
Alignment:
| Q |
1 |
caaaaagtcacacacaaacatggctttcaagccttgaaaatgaaaatcctatagatcaagatagcccatgtgaaattgttgctaaaaacaccatcacagg |
100 |
Q |
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| T |
7756454 |
caaaaagtcacacacaaacatgggtttcaagccttgaaaatgaaaatcctatagatcaagatagcccatgtgaaattgttgctaaaaacaccatcacagg |
7756553 |
T |
|
| Q |
101 |
taaagtagcaactgagggaaagcttgttgaagatgttttagcagtgaaatcaatgaaagattcagtttttgaaccagcccatgaatttttgttcacttgt |
200 |
Q |
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| T |
7756554 |
taaagtagcaactgagggaaagcttgttgaagatgttttagcagtgaaatcaatgaaagattcaatttttgaaccagcccatgaatatttgttcacttgt |
7756653 |
T |
|
| Q |
201 |
tcaaatacccttttgttgaatgggttatctaatgatgctaaaggcattgttgggtttggtagatctagaacctctttttcatcacagtttttcaattcaa |
300 |
Q |
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| T |
7756654 |
tcaaatacccttttgttgaatgggttatctaatgatgctaaaggcattgttgggtttggtagatctagaacctctttttcatcacagtttttcaattcaa |
7756753 |
T |
|
| Q |
301 |
ttgattcagacagaaaaatcactttttgtttatcttcttcttctgggtttgtttcacttggaagaagaaacaaggtttctgaatctgaaattttcagatc |
400 |
Q |
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| T |
7756754 |
ttgattcagacagaaaaatcactttttgtttatcttcttcttctgggtttgtttcacttggaagaagaaacaaggtttctgaatctgaaattttcagatc |
7756853 |
T |
|
| Q |
401 |
tttaacattcacaccacttgtcaccaaccaaaacatggaatatttcatcaacgttaattccatcaaaattggtggcaaaaaagtttcttttaacacccta |
500 |
Q |
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| T |
7756854 |
tttaacattcacaccacttgtcaccaaccaaaacatggaatatttcatcaacgttaattccatcaaaattggtggcaaaaaagtttcttttaacacccta |
7756953 |
T |
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| Q |
501 |
tctttgtctcaagaaggcaatagtggaactttattgagttctattgtgccttat |
554 |
Q |
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| T |
7756954 |
tctttgtctcaagaaggcaatagtggaactttattgagttctattgtgccttat |
7757007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 120 - 389
Target Start/End: Complemental strand, 19130123 - 19129857
Alignment:
| Q |
120 |
aagcttgttgaagatgttttagcagtgaaatcaatgaaagattcagtttttgaaccagcccatgaatttttgttcacttgttcaaatacccttttgttga |
219 |
Q |
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| T |
19130123 |
aagcttgttgaagatgttgtagcagtgaaataaattaaagattcaatttttgaaccagcccatgaatttttattcacttgtttaaatacccttttgttta |
19130024 |
T |
|
| Q |
220 |
atgggttatctaatgatgctaaaggcattgttgggtttggtagatctagaacctctttttcatcacagtttttcaattcaattgattcagacagaaaaat |
319 |
Q |
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| T |
19130023 |
atgggttatctaatgatgctaaaggcatcgttggattgggtagatctagaacttctttttcatcacagtttttcaattcaatagattcacaaagaaaaat |
19129924 |
T |
|
| Q |
320 |
cactttttgtttatcttcttcttctgggtttgtttcacttggaagaagaaacaaggtttctgaatctgaa |
389 |
Q |
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| T |
19129923 |
cactttttggtcatcttcttcatatgggtttgtttcactt---tgaagaaacaaggtttctaaatctgaa |
19129857 |
T |
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