View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4234_low_4 (Length: 385)
Name: NF4234_low_4
Description: NF4234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4234_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 527003 - 526711
Alignment:
| Q |
19 |
tattaaacatgttgcttgtttctttgttactcttataacctgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtaga |
118 |
Q |
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| T |
527003 |
tattaaacatgttgcttgtttctttgttactcttataacctgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtaga |
526904 |
T |
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| Q |
119 |
agaggtaaa--atatcaattaatgtatttgacagtcacagttacggtcacttaattggaaaagttaatgactatgcaggacagtaactcagtaaggtact |
216 |
Q |
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| T |
526903 |
agaggtaaaatatatcaattaatgtatttgacagtcacagttacggtcacttaattggaaaagttaatgactatgcaggacagtaactcagtaaggtact |
526804 |
T |
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| Q |
217 |
aacaatgttnnnnnnntaagaataaaatattcattctatgattatcaatttaatctatcattgagttgagtcaactagaaacagacgtagaac |
309 |
Q |
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| T |
526803 |
aacaatgttcaaaaaataagaataaaatattcattctatgattatcaatttaatctatcattgagttgagtcaactagaaacagacgtagaac |
526711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 526675 - 526643
Alignment:
| Q |
345 |
gttcagcttcaagtttaatcatcgtagaataat |
377 |
Q |
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| T |
526675 |
gttcatcttcaagtttaatcatcgtagaataat |
526643 |
T |
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