View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4234_low_5 (Length: 338)
Name: NF4234_low_5
Description: NF4234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4234_low_5 |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0105 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 17056 - 17361
Alignment:
| Q |
15 |
cacagaagaagaaaaatgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttctc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17056 |
cacagaagaagaaaaatgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttctc |
17155 |
T |
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| Q |
115 |
acaaagatatggcattgatcggtgaagtatttgctcttgtagctagaattgaacttgcacttgctagtaattgcattaatcatcccaacttattaatttg |
214 |
Q |
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| T |
17156 |
ataaagatatggcattgatcggtgaagtatttgctcttgtagctagaattgaacttgcacttgctagtaattgcattaatcatcccaacttattaatttg |
17255 |
T |
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| Q |
215 |
ttctgtaaataagtgtaacaacacaataacatatatgatttagcaattgtttccaaatatattctattggtttaattattcgtgcaatctttgagcatca |
314 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17256 |
ttctgtaagtaagtgtaacaacacaataacatatatgatttagcaattgtttccaaatatattctattggtttaattattcgtgcaatctttgagcatca |
17355 |
T |
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| Q |
315 |
ctattg |
320 |
Q |
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|||||| |
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| T |
17356 |
ctattg |
17361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 8190481 - 8190786
Alignment:
| Q |
15 |
cacagaagaagaaaaatgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttctc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8190481 |
cacagaagaagaaaaatgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttctc |
8190580 |
T |
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| Q |
115 |
acaaagatatggcattgatcggtgaagtatttgctcttgtagctagaattgaacttgcacttgctagtaattgcattaatcatcccaacttattaatttg |
214 |
Q |
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| T |
8190581 |
ataaagatatggcattgatcggtgaagtatttgctcttgtagctagaattgaacttgcacttgctagtaattgcattaatcatcccaacttattaatttg |
8190680 |
T |
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| Q |
215 |
ttctgtaaataagtgtaacaacacaataacatatatgatttagcaattgtttccaaatatattctattggtttaattattcgtgcaatctttgagcatca |
314 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8190681 |
ttctgtaagtaagtgtaacaacacaataacatatatgatttagcaattgtttccaaatatattctattggtttaattattcgtgcaatctttgagcatca |
8190780 |
T |
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| Q |
315 |
ctattg |
320 |
Q |
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|||||| |
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| T |
8190781 |
ctattg |
8190786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 8169805 - 8169722
Alignment:
| Q |
29 |
aatgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttc |
112 |
Q |
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||||| |||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||| ||||||||| ||||||| |
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| T |
8169805 |
aatgtgaaatggattttcaaagtcaaattgaatccaaatgacacattttcaaagcacaaagcaagactagtagctagaggcttc |
8169722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 1182098 - 1182180
Alignment:
| Q |
30 |
atgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttc |
112 |
Q |
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|||| ||||| |||||||| || || ||||| || |||||||| ||||||| |||||||||||| |||| |||| ||||||| |
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| T |
1182098 |
atgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttc |
1182180 |
T |
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