View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4234_low_6 (Length: 311)
Name: NF4234_low_6
Description: NF4234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4234_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 34574724 - 34575008
Alignment:
| Q |
17 |
aaagagaatacatcaccatcaagtattattgaaaaaactcaaatttaaaatcaatgcaagtgcataaaattgccatatcattaagtgatgatattttggt |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34574724 |
aaagagaatacgtcaccatcaagtattattgaaaaaactcaaatttaaaatcaatgcaagtgcataaaattgccatatcattaagcgatgatattttggt |
34574823 |
T |
|
| Q |
117 |
ttgattgtacaaacagttaaatcaatcacaagttctgtgaattaaggaactagaaatcgtgttgtaaaaggagatacaagtatccttccttgcatgcttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34574824 |
ttgattgtacaaacagttaaatcaatcacaagttctgtgaattaaggaactagaaatcgggttgtaaaaggagatacaagtatccttccttgcatgcttc |
34574923 |
T |
|
| Q |
217 |
ttgatcagtctcaggtcagcacggacatttgtctaagtaacatgcttcctcccaaattctaaaacgagatactacacattatatt |
301 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34574924 |
ttgatcagtctcaggtcagcacagacatttgtctaagtaacatgcttcctcccaaattctaaaacgagatactacacattatatt |
34575008 |
T |
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